Result of FASTA (omim) for
pF1KE2548
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2548, 940 aa
1>>>pF1KE2548 940 - 940 aa - 940 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4910+/-0.000398; mu= 8.2381+/- 0.025
mean_var=214.9767+/-43.228, 0's: 0 Z-trim(119.7): 5 B-trim: 264 in 1/55
Lambda= 0.087474
statistics sampled from 34026 (34031) to 34026 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.399), width: 16
Scan time: 12.780
The best scores are: opt bits E(85289)
NP_004619 (OMIM: 278720,613208) DNA repair protein ( 940) 6278 805.8 0
XP_011532395 (OMIM: 278720,613208) PREDICTED: DNA ( 689) 4509 582.4 2.6e-165
>>NP_004619 (OMIM: 278720,613208) DNA repair protein com (940 aa)
initn: 6310 init1: 6278 opt: 6278 Z-score: 4293.7 bits: 805.8 E(85289): 0
Smith-Waterman score: 6278; 99.9% identity (100.0% similar) in 940 aa overlap (1-940:1-940)
10 20 30 40 50 60
pF1KE2 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL
850 860 870 880 890 900
910 920 930 940
pF1KE2 AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEKL
::::::::::::::::::::::::::::::::::::::.:
NP_004 AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEQL
910 920 930 940
>>XP_011532395 (OMIM: 278720,613208) PREDICTED: DNA repa (689 aa)
initn: 4509 init1: 4509 opt: 4509 Z-score: 3089.0 bits: 582.4 E(85289): 2.6e-165
Smith-Waterman score: 4509; 100.0% identity (100.0% similar) in 678 aa overlap (1-678:1-678)
10 20 30 40 50 60
pF1KE2 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA
::::::::::::::::::
XP_011 PETAAILGYCRGEAVYSRKMSRCCLPVNP
670 680
940 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 03:54:53 2016 done: Tue Nov 8 03:54:55 2016
Total Scan time: 12.780 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]