FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2548, 940 aa 1>>>pF1KE2548 940 - 940 aa - 940 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.4910+/-0.000398; mu= 8.2381+/- 0.025 mean_var=214.9767+/-43.228, 0's: 0 Z-trim(119.7): 5 B-trim: 264 in 1/55 Lambda= 0.087474 statistics sampled from 34026 (34031) to 34026 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.399), width: 16 Scan time: 12.780 The best scores are: opt bits E(85289) NP_004619 (OMIM: 278720,613208) DNA repair protein ( 940) 6278 805.8 0 XP_011532395 (OMIM: 278720,613208) PREDICTED: DNA ( 689) 4509 582.4 2.6e-165 >>NP_004619 (OMIM: 278720,613208) DNA repair protein com (940 aa) initn: 6310 init1: 6278 opt: 6278 Z-score: 4293.7 bits: 805.8 E(85289): 0 Smith-Waterman score: 6278; 99.9% identity (100.0% similar) in 940 aa overlap (1-940:1-940) 10 20 30 40 50 60 pF1KE2 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE2 EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE2 RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE2 EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL 850 860 870 880 890 900 910 920 930 940 pF1KE2 AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEKL ::::::::::::::::::::::::::::::::::::::.: NP_004 AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEQL 910 920 930 940 >>XP_011532395 (OMIM: 278720,613208) PREDICTED: DNA repa (689 aa) initn: 4509 init1: 4509 opt: 4509 Z-score: 3089.0 bits: 582.4 E(85289): 2.6e-165 Smith-Waterman score: 4509; 100.0% identity (100.0% similar) in 678 aa overlap (1-678:1-678) 10 20 30 40 50 60 pF1KE2 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA :::::::::::::::::: XP_011 PETAAILGYCRGEAVYSRKMSRCCLPVNP 670 680 940 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:54:53 2016 done: Tue Nov 8 03:54:55 2016 Total Scan time: 12.780 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]