Result of FASTA (ccds) for
pF1KE2553
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2553, 258 aa
1>>>pF1KE2553 258 - 258 aa - 258 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8512+/-0.000732; mu= 13.4032+/- 0.045
mean_var=88.4016+/-17.528, 0's: 0 Z-trim(111.5): 119 B-trim: 0 in 0/53
Lambda= 0.136409
statistics sampled from 12281 (12401) to 12281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.381), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS33669.1 PPARA gene_id:5465|Hs108|chr22 ( 468) 1609 326.0 2.8e-89
CCDS4804.1 PPARD gene_id:5467|Hs108|chr6 ( 361) 760 158.9 4.5e-39
CCDS4803.1 PPARD gene_id:5467|Hs108|chr6 ( 441) 760 158.9 5.3e-39
CCDS54994.1 PPARD gene_id:5467|Hs108|chr6 ( 402) 757 158.3 7.4e-39
CCDS2610.2 PPARG gene_id:5468|Hs108|chr3 ( 477) 722 151.5 1e-36
CCDS2609.1 PPARG gene_id:5468|Hs108|chr3 ( 505) 722 151.5 1.1e-36
CCDS11361.1 NR1D1 gene_id:9572|Hs108|chr17 ( 614) 446 97.2 2.8e-20
CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3 ( 579) 445 97.0 3e-20
CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 402 88.5 8.9e-18
CCDS6646.1 RORB gene_id:6096|Hs108|chr9 ( 459) 397 87.5 1.7e-17
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 388 85.7 6e-17
CCDS10179.1 RORA gene_id:6095|Hs108|chr15 ( 556) 389 86.0 6.1e-17
CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 385 85.1 8.8e-17
CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 385 85.2 9e-17
CCDS30856.1 RORC gene_id:6097|Hs108|chr1 ( 497) 384 85.0 1.1e-16
CCDS1004.1 RORC gene_id:6097|Hs108|chr1 ( 518) 384 85.0 1.1e-16
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 380 84.1 1.6e-16
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 379 84.0 2e-16
CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 377 83.6 2.5e-16
CCDS45271.1 RORA gene_id:6095|Hs108|chr15 ( 468) 377 83.6 2.7e-16
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 376 83.3 2.8e-16
CCDS10177.1 RORA gene_id:6095|Hs108|chr15 ( 523) 377 83.6 3e-16
CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 376 83.4 3.1e-16
CCDS10178.1 RORA gene_id:6095|Hs108|chr15 ( 548) 377 83.6 3.1e-16
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 374 83.0 4e-16
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 372 82.5 4.2e-16
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 369 81.9 6.9e-16
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 363 80.9 2e-15
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 363 80.9 2e-15
CCDS35137.1 NR6A1 gene_id:2649|Hs108|chr9 ( 480) 361 80.4 2.5e-15
CCDS73751.1 NR2E3 gene_id:10002|Hs108|chr15 ( 367) 359 80.0 2.6e-15
CCDS73750.1 NR2E3 gene_id:10002|Hs108|chr15 ( 410) 359 80.0 2.8e-15
CCDS6744.1 NR4A3 gene_id:8013|Hs108|chr9 ( 443) 351 78.4 9e-15
CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 350 78.2 9.9e-15
CCDS6743.1 NR4A3 gene_id:8013|Hs108|chr9 ( 626) 351 78.5 1.2e-14
CCDS6742.1 NR4A3 gene_id:8013|Hs108|chr9 ( 637) 351 78.6 1.2e-14
CCDS55340.1 NR6A1 gene_id:2649|Hs108|chr9 ( 475) 346 77.5 1.9e-14
CCDS65127.1 NR6A1 gene_id:2649|Hs108|chr9 ( 476) 346 77.5 1.9e-14
CCDS41821.1 NR2C1 gene_id:7181|Hs108|chr12 ( 467) 343 76.9 2.8e-14
CCDS44953.1 NR2C1 gene_id:7181|Hs108|chr12 ( 483) 343 76.9 2.9e-14
CCDS9051.1 NR2C1 gene_id:7181|Hs108|chr12 ( 603) 343 77.0 3.4e-14
CCDS1400.1 NR5A2 gene_id:2494|Hs108|chr1 ( 495) 339 76.1 5.1e-14
CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 334 75.1 8.2e-14
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 324 73.2 4.6e-13
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 324 73.2 4.6e-13
CCDS1401.1 NR5A2 gene_id:2494|Hs108|chr1 ( 541) 323 73.0 4.8e-13
CCDS6856.1 NR5A1 gene_id:2516|Hs108|chr9 ( 461) 322 72.8 4.9e-13
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 324 73.2 4.9e-13
CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 320 72.3 5.6e-13
CCDS60383.1 NR5A2 gene_id:2494|Hs108|chr1 ( 469) 321 72.6 5.7e-13
>>CCDS33669.1 PPARA gene_id:5465|Hs108|chr22 (468 aa)
initn: 1609 init1: 1609 opt: 1609 Z-score: 1716.3 bits: 326.0 E(32554): 2.8e-89
Smith-Waterman score: 1609; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KE2 MVDTESPLCPLSPLEAGDLESPLSEEFLQEMGNIQEISQSIGEDSSGSFGFTEYQYLGSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVDTESPLCPLSPLEAGDLESPLSEEFLQEMGNIQEISQSIGEDSSGSFGFTEYQYLGSC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGALNIECRICGDKASGYHYGVHACE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGALNIECRICGDKASGYHYGVHACE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 KAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPVGV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFV
190 200 210 220 230 240
250
pF1KE2 CGCSGFSWQHGTSVVEDD
CCDS33 IHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANL
250 260 270 280 290 300
>>CCDS4804.1 PPARD gene_id:5467|Hs108|chr6 (361 aa)
initn: 758 init1: 739 opt: 760 Z-score: 814.9 bits: 158.9 E(32554): 4.5e-39
Smith-Waterman score: 760; 66.5% identity (84.1% similar) in 170 aa overlap (66-235:40-207)
40 50 60 70 80 90
pF1KE2 EISQSIGEDSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPS
: :: :: .::: :. . : : .
CCDS48 EVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTD-LSRSSSPPSLLDQLQMGC-DGASC
10 20 30 40 50 60
100 110 120 130 140 150
pF1KE2 GALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQY
:.::.:::.:::::::.:::::::::::::::::::.:: :.::.:::::::::::::::
CCDS48 GSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQY
70 80 90 100 110 120
160 170 180 190 200 210
pF1KE2 CRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYL
:::.:::..:::::::::::::..:: :: : . . : . . ..::::...:.::.:::
CCDS48 CRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYL
130 140 150 160 170 180
220 230 240 250
pF1KE2 KNFNMNKVKARVILSGKASNNPVGVCGCSGFSWQHGTSVVEDD
:::::.: ::: ::.::::.
CCDS48 KNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFY
190 200 210 220 230 240
>>CCDS4803.1 PPARD gene_id:5467|Hs108|chr6 (441 aa)
initn: 739 init1: 739 opt: 760 Z-score: 813.7 bits: 158.9 E(32554): 5.3e-39
Smith-Waterman score: 760; 66.5% identity (84.1% similar) in 170 aa overlap (66-235:40-207)
40 50 60 70 80 90
pF1KE2 EISQSIGEDSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPS
: :: :: .::: :. . : : .
CCDS48 EVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTD-LSRSSSPPSLLDQLQMGC-DGASC
10 20 30 40 50 60
100 110 120 130 140 150
pF1KE2 GALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQY
:.::.:::.:::::::.:::::::::::::::::::.:: :.::.:::::::::::::::
CCDS48 GSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQY
70 80 90 100 110 120
160 170 180 190 200 210
pF1KE2 CRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYL
:::.:::..:::::::::::::..:: :: : . . : . . ..::::...:.::.:::
CCDS48 CRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYL
130 140 150 160 170 180
220 230 240 250
pF1KE2 KNFNMNKVKARVILSGKASNNPVGVCGCSGFSWQHGTSVVEDD
:::::.: ::: ::.::::.
CCDS48 KNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFY
190 200 210 220 230 240
>>CCDS54994.1 PPARD gene_id:5467|Hs108|chr6 (402 aa)
initn: 758 init1: 739 opt: 757 Z-score: 811.1 bits: 158.3 E(32554): 7.4e-39
Smith-Waterman score: 757; 67.1% identity (85.4% similar) in 164 aa overlap (72-235:6-168)
50 60 70 80 90 100
pF1KE2 GEDSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGALNIE
:: .::: :. . : : . :.::.:
CCDS54 MHQRDLSRSSSPPSLLDQLQMGC-DGASCGSLNME
10 20 30
110 120 130 140 150 160
pF1KE2 CRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKC
::.:::::::.:::::::::::::::::::.:: :.::.::::::::::::::::::.::
CCDS54 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKKNRNKCQYCRFQKC
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE2 LSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMN
:..:::::::::::::..:: :: : . . : . . ..::::...:.::.::::::::.
CCDS54 LALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSKHIYNAYLKNFNMT
100 110 120 130 140 150
230 240 250
pF1KE2 KVKARVILSGKASNNPVGVCGCSGFSWQHGTSVVEDD
: ::: ::.::::.
CCDS54 KKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT
160 170 180 190 200 210
>>CCDS2610.2 PPARG gene_id:5468|Hs108|chr3 (477 aa)
initn: 720 init1: 577 opt: 722 Z-score: 772.8 bits: 151.5 E(32554): 1e-36
Smith-Waterman score: 722; 62.6% identity (85.3% similar) in 163 aa overlap (74-235:82-243)
50 60 70 80 90 100
pF1KE2 DSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGAL-NIEC
::: : . .. : ::..: :::
CCDS26 DIPFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIEC
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE2 RICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCL
:.:::::::.::::::::::::::::::::::.::.:: .:.:.::.:::::::::.:::
CCDS26 RVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCL
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE2 SVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMNK
.::::::::::::::..:: :: ::: . . : . :.:::..:::..:..:.:.: ..:
CCDS26 AVGMSHNAIRFGRMPQAEKEKLLAEI-SSDIDQLNPESADLRALAKHLYDSYIKSFPLTK
180 190 200 210 220 230
230 240 250
pF1KE2 VKARVILSGKASNNPVGVCGCSGFSWQHGTSVVEDD
.:::.::.::...
CCDS26 AKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSV
240 250 260 270 280 290
>>CCDS2609.1 PPARG gene_id:5468|Hs108|chr3 (505 aa)
initn: 720 init1: 577 opt: 722 Z-score: 772.4 bits: 151.5 E(32554): 1.1e-36
Smith-Waterman score: 722; 62.6% identity (85.3% similar) in 163 aa overlap (74-235:110-271)
50 60 70 80 90 100
pF1KE2 DSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGAL-NIEC
::: : . .. : ::..: :::
CCDS26 DIPFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIEC
80 90 100 110 120 130
110 120 130 140 150 160
pF1KE2 RICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCL
:.:::::::.::::::::::::::::::::::.::.:: .:.:.::.:::::::::.:::
CCDS26 RVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCL
140 150 160 170 180 190
170 180 190 200 210 220
pF1KE2 SVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMNK
.::::::::::::::..:: :: ::: . . : . :.:::..:::..:..:.:.: ..:
CCDS26 AVGMSHNAIRFGRMPQAEKEKLLAEI-SSDIDQLNPESADLRALAKHLYDSYIKSFPLTK
200 210 220 230 240 250
230 240 250
pF1KE2 VKARVILSGKASNNPVGVCGCSGFSWQHGTSVVEDD
.:::.::.::...
CCDS26 AKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSV
260 270 280 290 300 310
>>CCDS11361.1 NR1D1 gene_id:9572|Hs108|chr17 (614 aa)
initn: 481 init1: 226 opt: 446 Z-score: 477.7 bits: 97.2 E(32554): 2.8e-20
Smith-Waterman score: 477; 42.6% identity (67.0% similar) in 188 aa overlap (9-188:48-220)
10 20 30
pF1KE2 MVDTESPLCP--LSPLEAGDLESPLSEEFLQEMGNIQE
:: . : .:.: . .. : :.:
CCDS11 GSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSLTQDPARSF----GSIPP
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE2 ISQSIGEDSSGSFGFTEYQ--YLGSCPGSDGSVITDT--LSPASSPSSVTYPVVPGSVDE
.. : ::.: . . . : :: ::: .. :. .::..: :..: . : :
CCDS11 SLSDDGSPSSSSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKSTSNITK--LNGMV--
80 90 100 110 120
100 110 120 130 140 150
pF1KE2 SPSGALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKC--DRSCKIQKKNR
. :..::: :::.::::::::::::::::.:. .. : .: ...:.: . ::
CCDS11 -------LLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE2 NKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRI
:.:: :::.::::::::..:.::::.:. :: .. ::.
CCDS11 NRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLETSPT
190 200 210 220 230 240
220 230 240 250
pF1KE2 YEAYLKNFNMNKVKARVILSGKASNNPVGVCGCSGFSWQHGTSVVEDD
CCDS11 QHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIFTY
250 260 270 280 290 300
>>CCDS33718.1 NR1D2 gene_id:9975|Hs108|chr3 (579 aa)
initn: 442 init1: 229 opt: 445 Z-score: 477.0 bits: 97.0 E(32554): 3e-20
Smith-Waterman score: 445; 50.0% identity (77.5% similar) in 120 aa overlap (87-199:84-202)
60 70 80 90 100 110
pF1KE2 LGSCPGSDGSVITDTLSPASSPSSVTYPVVPGSVDESPSGA-----LNIECRICGDKASG
:: . .: ::. . . :..::: :::
CCDS33 NPKNGDLANIEGILKNDRIDCSMKTSKSSAPG-MTKSHSGVTKFSGMVLLCKVCGDVASG
60 70 80 90 100 110
120 130 140 150 160
pF1KE2 YHYGVHACEGCKGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHN
.::::::::::::::::.:. .. : :: ...:.:.. :::.:: :::.::::::::..
CCDS33 FHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE2 AIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAYLKNFNMNKVKARVIL
:.::::.:. :: .. :. . . . .:.
CCDS33 AVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQTALPAQEQLRPKPQ
180 190 200 210 220 230
>>CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 (462 aa)
initn: 338 init1: 199 opt: 402 Z-score: 432.6 bits: 88.5 E(32554): 8.9e-18
Smith-Waterman score: 402; 34.2% identity (63.3% similar) in 240 aa overlap (17-241:45-269)
10 20 30 40
pF1KE2 MVDTESPLCPLSPLEAGDLESPLSE--EFLQEMGN-IQEISQSIGE
:.:.::.: .. :: .. ::. .:
CCDS35 VNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGP
20 30 40 50 60 70
50 60 70 80 90 100
pF1KE2 DSSGSFGFTEYQYLGSCPGSDGSVITDTLSPASSPSSVTYPV-VPG--SVDESPSGALNI
:.. :: :: ... ..:.:: .. :. . : .: ::: .
CCDS35 H---SMSVPTTPTLGFSTGSPQ--LSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMAS
80 90 100 110 120
110 120 130 140 150
pF1KE2 E----CRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQ
: ::::..:: ::::..::::::::.::.: :.: : ...: :.:..::.::
CCDS35 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYT-CRDNKDCLIDKRQRNRCQ
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE2 YCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRIYEAY
:::..:::..::...:.. : ...: . :...:.. .:. ..:: ::
CCDS35 YCRYQKCLAMGMKREAVQEER----QRGKDRN-----ENEVESTSSANEDMPVERILEAE
190 200 210 220 230
220 230 240 250
pF1KE2 L--KNFNMNKVKARVILSGKASNNPV-GVCGCSGFSWQHGTSVVEDD
: . . . :.: . :. .. :.:: ..:
CCDS35 LAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI
240 250 260 270 280 290
>>CCDS6646.1 RORB gene_id:6096|Hs108|chr9 (459 aa)
initn: 353 init1: 186 opt: 397 Z-score: 427.4 bits: 87.5 E(32554): 1.7e-17
Smith-Waterman score: 397; 40.0% identity (75.2% similar) in 145 aa overlap (100-237:8-150)
70 80 90 100 110 120
pF1KE2 DTLSPASSPSSVTYPVVPGSVDESPSGALNIECRICGDKASGYHYGVHACEGCKGFFRRT
: :.:::::.:: :::: .::::::::::.
CCDS66 MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRS
10 20 30
130 140 150 160 170 180
pF1KE2 IRLKLVYDKC--DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAE
. . :. : .:.: :.. :::.::.::..:::..:::..:..:::: .... .: ::
CCDS66 QQNNASYS-CPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAE
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE2 ILTCEHDIEDS---ETADLKSLAKRIYEAYLKN--FNMNKVKARVILSGKASNNPVGVCG
. .. .... .... ..:: :.: . ..: :.:. . . .:.. . :
CCDS66 VQKHQQRLQEQRQQQSGEAEALA-RVYSSSISNGLSNLNNETSGTYANGHVIDLPKSEGY
100 110 120 130 140 150
250
pF1KE2 CSGFSWQHGTSVVEDD
CCDS66 YNVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRI
160 170 180 190 200 210
258 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:48:12 2016 done: Tue Nov 8 10:48:13 2016
Total Scan time: 2.420 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]