(Circular) (Six-base) MAPSORT of: pF1KE2556.seq Check: 8246 from: 1 to: 6635 pF1KE2556 6635 bp With 182 enzymes: SgfI * January 9, 2015 15:32 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 1779 1779 Size: 6635 AatII G_ACGT'C Cuts at: 1385 1385 Size: 6635 AccI GT'mk_AC Cuts at: 1289 1577 3673 1289 Size: 288 2096 4251 Fragments arranged by size: 4251 2096 288 Acc65I G'GTAC_C Cuts at: 3651 3651 Size: 6635 AclI AA'CG_TT Cuts at: 1921 6475 1921 Size: 4554 2081 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 282 410 499 583 980 2569 3259 4460 4892 Size: 128 89 84 397 1589 690 1201 432 Cuts at: 4892 5639 5907 282 Size: 747 268 1010 Fragments arranged by size: 1589 1201 1010 747 690 432 397 268 128 89 84 AflII C'TTAA_G Cuts at: 2818 2818 Size: 6635 AflIII A'CryG_T Cuts at: 890 3987 5091 6068 890 Size: 3097 1104 977 1457 Fragments arranged by size: 3097 1457 1104 977 AgeI A'CCGG_T Cuts at: 5023 5023 Size: 6635 AhdI GACnn_n'nnGTC Cuts at: 1764 1764 Size: 6635 AleI CACnn'nnGTG Cuts at: 3431 3583 3431 Size: 152 6483 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 899 899 Size: 6635 AlwNI CAG_nnn'CTG Cuts at: 273 305 709 3214 3609 3940 5507 273 Size: 32 404 2505 395 331 1567 1401 Fragments arranged by size: 2505 1567 1401 404 395 331 32 ApaI G_GGCC'C Cuts at: 2283 2369 2283 Size: 86 6549 ApaLI G'TGCA_C Cuts at: 1295 1903 5405 1295 Size: 608 3502 2525 Fragments arranged by size: 3502 2525 608 ApoI r'AATT_y Cuts at: 604 2762 2813 3639 5988 6244 604 Size: 2158 51 826 2349 256 995 Fragments arranged by size: 2349 2158 995 826 256 51 AseI AT'TA_AT Cuts at: 20 20 Size: 6635 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6635 AvaI C'yCGr_G Cuts at: 253 1588 2282 2633 2696 3516 3655 253 Size: 1335 694 351 63 820 139 3233 Fragments arranged by size: 3233 1335 820 694 351 139 63 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 1206 1239 1420 1453 1206 Size: 33 181 33 6388 Fragments arranged by size: 6388 181 33 33 BamHI G'GATC_C Cuts at: 185 1271 3660 185 Size: 1086 2389 3160 Fragments arranged by size: 3160 2389 1086 BanI G'GyrC_C Cuts at: 2100 2286 3281 3651 4065 4313 4348 2100 Size: 186 995 370 414 248 35 4387 Fragments arranged by size: 4387 995 414 370 248 186 35 BanII G_rGCy'C Cuts at: 701 1251 1976 2036 2125 2283 2369 2387 2535 Size: 550 725 60 89 158 86 18 148 Cuts at: 2535 2606 3649 4679 701 Size: 71 1043 1030 2657 Fragments arranged by size: 2657 1043 1030 725 550 158 148 89 86 71 60 18 BbeI G_GCGC'C Cuts at: 2104 2290 4069 4317 2104 Size: 186 1779 248 4422 Fragments arranged by size: 4422 1779 248 186 BbsI GAAGACnn'nnnn_ Cuts at: 968 1073 3329 968 Size: 105 2256 4274 Fragments arranged by size: 4274 2256 105 BbvCI CC'TCA_GC Cuts at: 1325 3535 1325 Size: 2210 4425 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 90 124 90 Size: 34 6601 BciVI GTATCCnnnnn_n' Cuts at: 1207 4533 5294 6635 1207 Size: 3326 761 1341 1207 Fragments arranged by size: 3326 1341 1207 761 BclI T'GATC_A Cuts at: 573 4155 573 Size: 3582 3053 BfrBI ATG'CAT Cuts at: 382 382 Size: 6635 BglI GCCn_nnn'nGGC Cuts at: 1824 2051 1824 Size: 227 6408 BglII A'GATC_T Cuts at: 4150 6187 4150 Size: 2037 4598 BlpI GC'TnA_GC Cuts at: 543 2035 3747 543 Size: 1492 1712 3431 Fragments arranged by size: 3431 1712 1492 Bme1580I G_kGCm'C Cuts at: 1202 1299 1907 2283 2369 4260 4353 5409 1202 Size: 97 608 376 86 1891 93 1056 2428 Fragments arranged by size: 2428 1891 1056 608 376 97 93 86 BmgBI CAC'GTC Cuts at: 2397 2516 2397 Size: 119 6516 BmrI ACTGGGnnnn_n' Cuts at: 3269 3847 3928 4263 6407 3269 Size: 578 81 335 2144 3497 Fragments arranged by size: 3497 2144 578 335 81 BmtI G_CTAG'C Cuts at: 538 538 Size: 6635 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2561 5002 2561 Size: 2441 4194 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 295 2068 2401 2487 3603 295 Size: 1773 333 86 1116 3327 Fragments arranged by size: 3327 1773 1116 333 86 Bpu10I CC'TnA_GC Cuts at: 779 1325 1648 3535 779 Size: 546 323 1887 3879 Fragments arranged by size: 3879 1887 546 323 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2047 2205 3313 3811 4690 5182 5480 2047 Size: 158 1108 498 879 492 298 3202 Fragments arranged by size: 3202 1108 879 498 492 298 158 BsaI GGTCTCn'nnnn_ Cuts at: 934 2985 6339 934 Size: 2051 3354 1230 Fragments arranged by size: 3354 2051 1230 BsaAI yAC'GTr Cuts at: 1119 2299 3988 1119 Size: 1180 1689 3766 Fragments arranged by size: 3766 1689 1180 BsaBI GATnn'nnATC Cuts at: 6 3339 3478 4149 6186 6 Size: 3333 139 671 2037 455 Fragments arranged by size: 3333 2037 671 455 139 BsaHI Gr'CG_yC Cuts at: 1382 2101 2216 2287 3372 4066 4314 5016 6512 Size: 719 115 71 1085 694 248 702 1496 Cuts at: 6512 1382 Size: 1505 Fragments arranged by size: 1505 1496 1085 719 702 694 248 115 71 BsaWI w'CCGG_w Cuts at: 3824 4345 5023 5297 5444 5855 3824 Size: 521 678 274 147 411 4604 Fragments arranged by size: 4604 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 981 1011 981 Size: 30 6605 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 952 1089 2185 2257 2260 2263 2281 2284 3121 Size: 137 1096 72 3 3 18 3 837 Cuts at: 3121 952 Size: 4466 Fragments arranged by size: 4466 1096 837 137 72 18 3 3 3 BseYI C'CCAG_C Cuts at: 1109 2126 2131 2456 3436 4060 4818 5395 5891 Size: 1017 5 325 980 624 758 577 496 Cuts at: 5891 1109 Size: 1853 Fragments arranged by size: 1853 1017 980 758 624 577 496 325 5 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1987 2279 2356 3580 1987 Size: 292 77 1224 5042 Fragments arranged by size: 5042 1224 292 77 BsiEI CG_ry'CG Cuts at: 104 1269 1628 2447 4177 4223 5431 104 Size: 1165 359 819 1730 46 1208 1308 Fragments arranged by size: 1730 1308 1208 1165 819 359 46 BsiHKAI G_wGCw'C Cuts at: 238 1299 1604 1907 2848 3649 4427 4617 5409 Size: 1061 305 303 941 801 778 190 792 Cuts at: 5409 238 Size: 1464 Fragments arranged by size: 1464 1061 941 801 792 778 305 303 190 BsiWI C'GTAC_G Cuts at: 1547 1547 Size: 6635 BsmBI CGTCTCn'nnnn_ Cuts at: 1676 1772 2118 2465 1676 Size: 96 346 347 5846 Fragments arranged by size: 5846 347 346 96 Bsp1286I G_dGCh'C Cuts at: 238 701 1202 1251 1299 1604 1907 1976 2036 Size: 463 501 49 48 305 303 69 60 Cuts at: 2036 2125 2283 2369 2387 2535 2606 2848 3649 Size: 89 158 86 18 148 71 242 801 Cuts at: 3649 4260 4353 4427 4617 4679 5409 238 Size: 611 93 74 190 62 730 1464 Fragments arranged by size: 1464 801 730 611 501 463 305 303 242 190 158 148 93 89 86 74 71 69 62 60 49 48 18 BspEI T'CCGG_A Cuts at: 5855 5855 Size: 6635 BspHI T'CATG_A Cuts at: 1385 3476 5811 1385 Size: 2091 2335 2209 Fragments arranged by size: 2335 2209 2091 BspMI ACCTGCnnnn'nnnn_ Cuts at: 1046 1779 3685 3899 4201 4582 1046 Size: 733 1906 214 302 381 3099 Fragments arranged by size: 3099 1906 733 381 302 214 BsrBI CCG'CTC Cuts at: 50 1695 2276 4927 4981 6465 6630 50 Size: 1645 581 2651 54 1484 165 55 Fragments arranged by size: 2651 1645 1484 581 165 55 54 BsrDI GCAATG_nn' Cuts at: 881 3095 4547 881 Size: 2214 1452 2969 Fragments arranged by size: 2969 2214 1452 BsrFI r'CCGG_y Cuts at: 332 1796 2559 4633 4814 5023 332 Size: 1464 763 2074 181 209 1944 Fragments arranged by size: 2074 1944 1464 763 209 181 BsrGI T'GTAC_A Cuts at: 725 3587 725 Size: 2862 3773 BssHII G'CGCG_C Cuts at: 1987 2302 1987 Size: 315 6320 BssSI C'ACGA_G Cuts at: 4906 5264 4906 Size: 358 6277 BstAPI GCAn_nnn'nTGC Cuts at: 170 1956 4012 170 Size: 1786 2056 2793 Fragments arranged by size: 2793 2056 1786 BstBI TT'CG_AA Cuts at: 4996 4996 Size: 6635 BstYI r'GATC_y Cuts at: 1 185 1271 1592 3356 3660 4127 4150 4485 Size: 184 1086 321 1764 304 467 23 335 Cuts at: 4485 4731 5743 5829 5841 6187 1 Size: 246 1012 86 12 346 449 Fragments arranged by size: 1764 1086 1012 467 449 346 335 321 304 246 184 86 23 12 BtgI C'CryG_G Cuts at: 227 260 1565 1703 1943 2040 227 Size: 33 1305 138 240 97 4822 Fragments arranged by size: 4822 1305 240 138 97 33 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4585 4766 4929 4585 Size: 181 163 6291 Fragments arranged by size: 6291 181 163 BtsI GCAGTG_nn' Cuts at: 112 1290 1632 3426 3438 3878 112 Size: 1178 342 1794 12 440 2869 Fragments arranged by size: 2869 1794 1178 440 342 12 ClaI AT'CG_AT Cuts at: 2883 2883 Size: 6635 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 1121 1156 1121 Size: 35 6600 DraI TTT'AAA Cuts at: 3634 3634 Size: 6635 DraIII CAC_nnn'GTG Cuts at: 1914 1914 Size: 6635 DrdI GACnn_nn'nnGTC Cuts at: 4341 5199 4341 Size: 858 5777 EaeI y'GGCC_r Cuts at: 240 1625 1798 2027 2193 3139 4220 4394 4785 Size: 1385 173 229 166 946 1081 174 391 Cuts at: 4785 4812 6157 240 Size: 27 1345 718 Fragments arranged by size: 1385 1345 1081 946 718 391 229 174 173 166 27 EagI C'GGCC_G Cuts at: 1625 4220 1625 Size: 2595 4040 EarI CTCTTCn'nnn_ Cuts at: 758 2407 3098 3118 3347 4658 4868 758 Size: 1649 691 20 229 1311 210 2525 Fragments arranged by size: 2525 1649 1311 691 229 210 20 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 2191 4843 5153 5299 6445 2191 Size: 2652 310 146 1146 2381 Fragments arranged by size: 2652 2381 1146 310 146 EcoICRI GAG'CTC Cuts at: 3647 3647 Size: 6635 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 282 295 410 499 583 980 2068 2401 2487 Size: 13 115 89 84 397 1088 333 86 Cuts at: 2487 2569 3259 3603 4460 4892 5639 5907 282 Size: 82 690 344 857 432 747 268 1010 Fragments arranged by size: 1088 1010 857 747 690 432 397 344 333 268 115 89 86 84 82 13 EcoNI CCTnn'n_nnAGG Cuts at: 1557 2326 2714 3177 1557 Size: 769 388 463 5015 Fragments arranged by size: 5015 769 463 388 EcoO109I rG'GnC_Cy Cuts at: 1488 2052 2279 2331 2366 3774 1488 Size: 564 227 52 35 1408 4349 Fragments arranged by size: 4349 1408 564 227 52 35 EcoRI G'AATT_C Cuts at: 2813 3639 2813 Size: 826 5809 EcoRV GAT'ATC Cuts at: 489 489 Size: 6635 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 524 2914 4654 524 Size: 2390 1740 2505 Fragments arranged by size: 2505 2390 1740 FspI TGC'GCA Cuts at: 1742 4416 1742 Size: 2674 3961 HaeII r_GCGC'y Cuts at: 150 333 1424 1573 2104 2290 4069 4317 5339 Size: 183 1091 149 531 186 1779 248 1022 Cuts at: 5339 6318 150 Size: 979 467 Fragments arranged by size: 1779 1091 1022 979 531 467 248 186 183 149 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1750 1782 2560 2592 3346 3378 3584 3616 4477 Size: 32 778 32 754 32 206 32 861 Cuts at: 4477 4507 4509 4539 1750 Size: 30 2 30 3846 Fragments arranged by size: 3846 861 778 754 206 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 3674 3674 Size: 6635 HindIII A'AGCT_T Cuts at: 1236 1236 Size: 6635 KasI G'GCGC_C Cuts at: 2100 2286 4065 4313 2100 Size: 186 1779 248 4422 Fragments arranged by size: 4422 1779 248 186 KpnI G_GTAC'C Cuts at: 3655 3655 Size: 6635 MluI A'CGCG_T Cuts at: 6068 6068 Size: 6635 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 213 1249 1382 2192 2477 2528 2546 3449 5306 Size: 1036 133 810 285 51 18 903 1857 Cuts at: 5306 5490 213 Size: 184 1358 Fragments arranged by size: 1857 1358 1036 903 810 285 184 133 51 18 MscI TGG'CCA Cuts at: 242 3141 4396 242 Size: 2899 1255 2481 Fragments arranged by size: 2899 2481 1255 MslI CAynn'nnrTG Cuts at: 845 1148 2023 3431 3583 4624 4751 845 Size: 303 875 1408 152 1041 127 2729 Fragments arranged by size: 2729 1408 1041 875 303 152 127 MspA1I CmG'CkG Cuts at: 369 438 1567 1624 1746 2001 2460 3746 4060 Size: 69 1129 57 122 255 459 1286 314 Cuts at: 4060 4420 5433 5678 369 Size: 360 1013 245 1326 Fragments arranged by size: 1326 1286 1129 1013 459 360 314 255 245 122 69 57 NaeI GCC'GGC Cuts at: 4816 4816 Size: 6635 NarI GG'CG_CC Cuts at: 2101 2287 4066 4314 2101 Size: 186 1779 248 4422 Fragments arranged by size: 4422 1779 248 186 NdeI CA'TA_TG Cuts at: 1170 1170 Size: 6635 NgoMIV G'CCGG_C Cuts at: 4814 4814 Size: 6635 NheI G'CTAG_C Cuts at: 534 534 Size: 6635 NotI GC'GGCC_GC Cuts at: 1625 1625 Size: 6635 NsiI A_TGCA'T Cuts at: 384 384 Size: 6635 NspI r_CATG'y Cuts at: 732 894 1501 3534 3688 4188 5095 732 Size: 162 607 2033 154 500 907 2272 Fragments arranged by size: 2272 2033 907 607 500 162 154 PciI A'CATG_T Cuts at: 890 5091 890 Size: 4201 2434 PflMI CCAn_nnn'nTGG Cuts at: 273 669 2046 3148 273 Size: 396 1377 1102 3760 Fragments arranged by size: 3760 1377 1102 396 PfoI T'CCnGG_A Cuts at: 1925 2378 1925 Size: 453 6182 PmeI GTTT'AAAC Cuts at: 3634 3634 Size: 6635 PmlI CAC'GTG Cuts at: 2299 2299 Size: 6635 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5774 5806 5774 Size: 32 6603 PpuMI rG'GwC_Cy Cuts at: 2331 2331 Size: 6635 PspOMI G'GGCC_C Cuts at: 2279 2365 2279 Size: 86 6549 PspXI vC'TCGA_Gb Cuts at: 253 2633 253 Size: 2380 4255 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 1201 1233 1201 Size: 32 6603 PstI C_TGCA'G Cuts at: 443 1751 1961 3433 3682 4367 443 Size: 1308 210 1472 249 685 2711 Fragments arranged by size: 2711 1472 1308 685 249 210 PvuI CG_AT'CG Cuts at: 104 104 Size: 6635 PvuII CAG'CTG Cuts at: 369 438 1746 2001 4060 4420 369 Size: 69 1308 255 2059 360 2584 Fragments arranged by size: 2584 2059 1308 360 255 69 RsrII CG'GwC_CG Cuts at: 4830 4830 Size: 6635 SacI G_AGCT'C Cuts at: 3649 3649 Size: 6635 SacII CC_GC'GG Cuts at: 1568 1568 Size: 6635 SalI G'TCGA_C Cuts at: 3672 3672 Size: 6635 SapI GCTCTTCn'nnn_ Cuts at: 3118 4658 4868 3118 Size: 1540 210 4885 Fragments arranged by size: 4885 1540 210 SbfI CC_TGCA'GG Cuts at: 3682 3682 Size: 6635 ScaI AGT'ACT Cuts at: 6152 6152 Size: 6635 SexAI A'CCwGG_T Cuts at: 454 454 Size: 6635 SfcI C'TryA_G Cuts at: 33 439 1290 1554 1578 1653 1747 1957 3429 Size: 406 851 264 24 75 94 210 1472 Cuts at: 3429 3678 4363 5356 5547 33 Size: 249 685 993 191 1121 Fragments arranged by size: 1472 1121 993 851 685 406 264 249 210 191 94 75 24 SfiI GGCCn_nnn'nGGCC Cuts at: 2051 2051 Size: 6635 SfoI GGC'GCC Cuts at: 2102 2288 4067 4315 2102 Size: 186 1779 248 4422 Fragments arranged by size: 4422 1779 248 186 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6635 SgrAI Cr'CCGG_yG Cuts at: 332 332 Size: 6635 SmaI CCC'GGG Cuts at: 2284 3657 2284 Size: 1373 5262 SmlI C'TyrA_G Cuts at: 253 2062 2184 2633 2696 2818 3328 3790 4705 Size: 1809 122 449 63 122 510 462 915 Cuts at: 4705 5197 5459 253 Size: 492 262 1429 Fragments arranged by size: 1809 1429 915 510 492 462 449 262 122 122 63 SpeI A'CTAG_T Cuts at: 67 67 Size: 6635 SphI G_CATG'C Cuts at: 1501 3688 4188 1501 Size: 2187 500 3948 Fragments arranged by size: 3948 2187 500 SrfI GCCC'GGGC Cuts at: 2284 2284 Size: 6635 StuI AGG'CCT Cuts at: 1392 3236 1392 Size: 1844 4791 StyI C'CwwG_G Cuts at: 789 2387 3769 4123 789 Size: 1598 1382 354 3301 Fragments arranged by size: 3301 1598 1382 354 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 4218 4351 4810 5019 4218 Size: 133 459 209 5834 Fragments arranged by size: 5834 459 209 133 TatI w'GTAC_w Cuts at: 725 3575 3587 6150 725 Size: 2850 12 2563 1210 Fragments arranged by size: 2850 2563 1210 12 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 889 921 981 1013 2711 2743 3378 3410 6152 Size: 32 60 32 1698 32 635 32 2742 Cuts at: 6152 6184 889 Size: 32 1340 Fragments arranged by size: 2742 1698 1340 635 60 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 4432 4432 Size: 6635 XbaI T'CTAG_A Cuts at: 3666 3666 Size: 6635 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2335 3433 4130 2335 Size: 1098 697 4840 Fragments arranged by size: 4840 1098 697 XhoI C'TCGA_G Cuts at: 253 2633 2696 253 Size: 2380 63 4192 Fragments arranged by size: 4192 2380 63 XmaI C'CCGG_G Cuts at: 2282 3655 2282 Size: 1373 5262 XmnI GAAnn'nnTTC Cuts at: 2813 2813 Size: 6635 ZraI GAC'GTC Cuts at: 1383 1383 Size: 6635 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NdeI NgoMIV NheI NotI NsiI NspI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PspOMI PspXI PsrI PstI PvuI PvuII RsrII SacI SacII SalI SapI SbfI ScaI SexAI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SpeI SphI SrfI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BsmI BstEII BstXI BstZ17I Bsu36I FseI FspAI HpaI MfeI NcoI NruI PacI PasI PshAI PsiI SanDI SnaBI SspI SwaI