FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2602, 742 aa 1>>>pF1KE2602 742 - 742 aa - 742 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5914+/-0.000419; mu= 9.0065+/- 0.026 mean_var=142.2990+/-28.375, 0's: 0 Z-trim(115.3): 80 B-trim: 16 in 3/55 Lambda= 0.107516 statistics sampled from 25623 (25704) to 25623 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.301), width: 16 Scan time: 7.140 The best scores are: opt bits E(85289) NP_000601 (OMIM: 107269,609027) CD44 antigen isofo ( 742) 5017 790.7 0 XP_005253288 (OMIM: 107269,609027) PREDICTED: CD44 ( 743) 5005 788.8 0 XP_006718451 (OMIM: 107269,609027) PREDICTED: CD44 ( 741) 5000 788.0 0 XP_005253289 (OMIM: 107269,609027) PREDICTED: CD44 ( 742) 4988 786.2 0 XP_011518784 (OMIM: 107269,609027) PREDICTED: CD44 ( 675) 3663 580.6 7.1e-165 NP_001001389 (OMIM: 107269,609027) CD44 antigen is ( 699) 3211 510.5 9.3e-144 XP_005253292 (OMIM: 107269,609027) PREDICTED: CD44 ( 700) 3196 508.2 4.7e-143 XP_016874072 (OMIM: 107269,609027) PREDICTED: CD44 ( 699) 2975 473.9 9.7e-133 XP_011518786 (OMIM: 107269,609027) PREDICTED: CD44 ( 657) 2959 471.4 5.2e-132 XP_011518785 (OMIM: 107269,609027) PREDICTED: CD44 ( 658) 2956 470.9 7.1e-132 XP_011518787 (OMIM: 107269,609027) PREDICTED: CD44 ( 656) 2942 468.8 3.2e-131 XP_011518789 (OMIM: 107269,609027) PREDICTED: CD44 ( 446) 2925 466.0 1.5e-130 XP_005253291 (OMIM: 107269,609027) PREDICTED: CD44 ( 702) 2415 387.0 1.4e-106 XP_005253290 (OMIM: 107269,609027) PREDICTED: CD44 ( 703) 2389 383.0 2.3e-105 XP_005253295 (OMIM: 107269,609027) PREDICTED: CD44 ( 580) 2382 381.9 4.1e-105 XP_005253296 (OMIM: 107269,609027) PREDICTED: CD44 ( 578) 2116 340.6 1.1e-92 XP_006718453 (OMIM: 107269,609027) PREDICTED: CD44 ( 397) 2100 338.0 4.4e-92 XP_016874073 (OMIM: 107269,609027) PREDICTED: CD44 ( 446) 2097 337.6 6.7e-92 XP_011518788 (OMIM: 107269,609027) PREDICTED: CD44 ( 537) 2086 335.9 2.5e-91 XP_005253297 (OMIM: 107269,609027) PREDICTED: CD44 ( 535) 1771 287.1 1.3e-76 NP_001001390 (OMIM: 107269,609027) CD44 antigen is ( 493) 1754 284.4 7.5e-76 XP_011518790 (OMIM: 107269,609027) PREDICTED: CD44 ( 425) 1548 252.4 2.8e-66 XP_011518791 (OMIM: 107269,609027) PREDICTED: CD44 ( 402) 1539 251.0 7e-66 XP_016874074 (OMIM: 107269,609027) PREDICTED: CD44 ( 403) 1539 251.0 7e-66 NP_001189484 (OMIM: 107269,609027) CD44 antigen is ( 429) 1533 250.1 1.4e-65 NP_001189486 (OMIM: 107269,609027) CD44 antigen is ( 294) 1527 249.1 2e-65 NP_001189485 (OMIM: 107269,609027) CD44 antigen is ( 340) 1527 249.1 2.2e-65 NP_001001391 (OMIM: 107269,609027) CD44 antigen is ( 361) 1527 249.1 2.3e-65 NP_001001392 (OMIM: 107269,609027) CD44 antigen is ( 139) 536 95.2 2e-19 NP_006682 (OMIM: 605702) lymphatic vessel endothel ( 322) 271 54.3 9.4e-07 >>NP_000601 (OMIM: 107269,609027) CD44 antigen isoform 1 (742 aa) initn: 5017 init1: 5017 opt: 5017 Z-score: 4215.5 bits: 790.7 E(85289): 0 Smith-Waterman score: 5017; 99.7% identity (99.9% similar) in 742 aa overlap (1-742:1-742) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_000 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : NP_000 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET 670 680 690 700 710 720 730 740 pF1KE2 PDQFMTADETRNLQNVDMKIGV :::::::::::::::::::::: NP_000 PDQFMTADETRNLQNVDMKIGV 730 740 >>XP_005253288 (OMIM: 107269,609027) PREDICTED: CD44 ant (743 aa) initn: 2665 init1: 2665 opt: 5005 Z-score: 4205.4 bits: 788.8 E(85289): 0 Smith-Waterman score: 5005; 99.6% identity (99.7% similar) in 743 aa overlap (1-742:1-743) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD 250 260 270 280 290 300 310 320 330 340 350 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: XP_005 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: XP_005 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI 430 440 450 460 470 480 480 490 500 510 520 530 pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND 490 500 510 520 530 540 540 550 560 570 580 590 pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN 550 560 570 580 590 600 600 610 620 630 640 650 pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 610 620 630 640 650 660 660 670 680 690 700 710 pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE 670 680 690 700 710 720 720 730 740 pF1KE2 TPDQFMTADETRNLQNVDMKIGV ::::::::::::::::::::::: XP_005 TPDQFMTADETRNLQNVDMKIGV 730 740 >>XP_006718451 (OMIM: 107269,609027) PREDICTED: CD44 ant (741 aa) initn: 2944 init1: 2944 opt: 5000 Z-score: 4201.2 bits: 788.0 E(85289): 0 Smith-Waterman score: 5000; 99.6% identity (99.7% similar) in 742 aa overlap (1-742:1-741) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: XP_006 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: : XP_006 HSTTGTAA-SAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT 430 440 450 460 470 490 500 510 520 530 540 pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV 480 490 500 510 520 530 550 560 570 580 590 600 pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR 540 550 560 570 580 590 610 620 630 640 650 660 pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL 600 610 620 630 640 650 670 680 690 700 710 720 pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET 660 670 680 690 700 710 730 740 pF1KE2 PDQFMTADETRNLQNVDMKIGV :::::::::::::::::::::: XP_006 PDQFMTADETRNLQNVDMKIGV 720 730 740 >>XP_005253289 (OMIM: 107269,609027) PREDICTED: CD44 ant (742 aa) initn: 4446 init1: 4446 opt: 4988 Z-score: 4191.2 bits: 786.2 E(85289): 0 Smith-Waterman score: 4988; 99.5% identity (99.6% similar) in 743 aa overlap (1-742:1-742) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD 250 260 270 280 290 300 310 320 330 340 350 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: XP_005 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: XP_005 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SHSTTGTAA-SAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI 430 440 450 460 470 480 490 500 510 520 530 pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND 480 490 500 510 520 530 540 550 560 570 580 590 pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN 540 550 560 570 580 590 600 610 620 630 640 650 pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 600 610 620 630 640 650 660 670 680 690 700 710 pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE 660 670 680 690 700 710 720 730 740 pF1KE2 TPDQFMTADETRNLQNVDMKIGV ::::::::::::::::::::::: XP_005 TPDQFMTADETRNLQNVDMKIGV 720 730 740 >>XP_011518784 (OMIM: 107269,609027) PREDICTED: CD44 ant (675 aa) initn: 3684 init1: 2384 opt: 3663 Z-score: 3081.0 bits: 580.6 E(85289): 7.1e-165 Smith-Waterman score: 4411; 90.3% identity (90.4% similar) in 743 aa overlap (1-742:1-675) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD 250 260 270 280 290 300 310 320 330 340 350 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: XP_011 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: XP_011 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI 430 440 450 460 470 480 480 490 500 510 520 530 pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSR--- 490 500 510 520 530 540 550 560 570 580 590 pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN XP_011 ------------------------------------------------------------ 600 610 620 630 640 650 pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 -----DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 540 550 560 570 580 590 660 670 680 690 700 710 pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE 600 610 620 630 640 650 720 730 740 pF1KE2 TPDQFMTADETRNLQNVDMKIGV ::::::::::::::::::::::: XP_011 TPDQFMTADETRNLQNVDMKIGV 660 670 >>NP_001001389 (OMIM: 107269,609027) CD44 antigen isofor (699 aa) initn: 3196 init1: 3196 opt: 3211 Z-score: 2701.9 bits: 510.5 E(85289): 9.3e-144 Smith-Waterman score: 4629; 93.8% identity (94.1% similar) in 742 aa overlap (1-742:1-699) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE ::::::::::::::::::::::::::::::::::::::::::. NP_001 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATS----------------- 190 200 210 220 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD :::::::::::::::::::::::::::::::::: NP_001 --------------------------TSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD 230 240 250 310 320 330 340 350 360 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN 260 270 280 290 300 310 370 380 390 400 410 420 pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_001 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS 320 330 340 350 360 370 430 440 450 460 470 480 pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : NP_001 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT 380 390 400 410 420 430 490 500 510 520 530 540 pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV 440 450 460 470 480 490 550 560 570 580 590 600 pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR 500 510 520 530 540 550 610 620 630 640 650 660 pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL 560 570 580 590 600 610 670 680 690 700 710 720 pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET 620 630 640 650 660 670 730 740 pF1KE2 PDQFMTADETRNLQNVDMKIGV :::::::::::::::::::::: NP_001 PDQFMTADETRNLQNVDMKIGV 680 690 >>XP_005253292 (OMIM: 107269,609027) PREDICTED: CD44 ant (700 aa) initn: 4190 init1: 2665 opt: 3196 Z-score: 2689.3 bits: 508.2 E(85289): 4.7e-143 Smith-Waterman score: 4617; 93.7% identity (93.9% similar) in 743 aa overlap (1-742:1-700) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE ::::::::::::::::::::::::::::::::::::::::::. XP_005 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATS----------------- 190 200 210 220 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD :::::::::::::::::::::::::::::::::: XP_005 --------------------------TSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD 230 240 250 310 320 330 340 350 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: XP_005 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW 260 270 280 290 300 310 360 370 380 390 400 410 pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: XP_005 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED 320 330 340 350 360 370 420 430 440 450 460 470 pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI 380 390 400 410 420 430 480 490 500 510 520 530 pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND 440 450 460 470 480 490 540 550 560 570 580 590 pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN 500 510 520 530 540 550 600 610 620 630 640 650 pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 560 570 580 590 600 610 660 670 680 690 700 710 pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE 620 630 640 650 660 670 720 730 740 pF1KE2 TPDQFMTADETRNLQNVDMKIGV ::::::::::::::::::::::: XP_005 TPDQFMTADETRNLQNVDMKIGV 680 690 700 >>XP_016874072 (OMIM: 107269,609027) PREDICTED: CD44 ant (699 aa) initn: 4130 init1: 2384 opt: 2975 Z-score: 2504.1 bits: 473.9 E(85289): 9.7e-133 Smith-Waterman score: 4587; 93.7% identity (93.8% similar) in 743 aa overlap (1-742:1-699) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD 250 260 270 280 290 300 310 320 330 340 350 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: XP_016 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: XP_016 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST :::::::: ::::::: XP_016 SHSTTGTA--------------------------------------------DMDSSHSI 430 480 490 500 510 520 530 pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND 440 450 460 470 480 490 540 550 560 570 580 590 pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN 500 510 520 530 540 550 600 610 620 630 640 650 pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 560 570 580 590 600 610 660 670 680 690 700 710 pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE 620 630 640 650 660 670 720 730 740 pF1KE2 TPDQFMTADETRNLQNVDMKIGV ::::::::::::::::::::::: XP_016 TPDQFMTADETRNLQNVDMKIGV 680 690 >>XP_011518786 (OMIM: 107269,609027) PREDICTED: CD44 ant (657 aa) initn: 2948 init1: 2948 opt: 2959 Z-score: 2491.0 bits: 471.4 E(85289): 5.2e-132 Smith-Waterman score: 4269; 88.3% identity (88.4% similar) in 742 aa overlap (1-742:1-657) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE :::::::::::::::::::::::::::::::::::::::::: XP_011 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT------------------ 190 200 210 220 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD XP_011 ------------------------------------------------------------ 310 320 330 340 350 360 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 -------ISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWN 230 240 250 260 270 370 380 390 400 410 420 pF1KE2 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: XP_011 PEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKEDS 280 290 300 310 320 330 430 440 450 460 470 480 pF1KE2 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : XP_011 HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSIT 340 350 360 370 380 390 490 500 510 520 530 540 pF1KE2 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDV 400 410 420 430 440 450 550 560 570 580 590 600 pF1KE2 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNR 460 470 480 490 500 510 610 620 630 640 650 660 pF1KE2 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLAL 520 530 540 550 560 570 670 680 690 700 710 720 pF1KE2 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSET 580 590 600 610 620 630 730 740 pF1KE2 PDQFMTADETRNLQNVDMKIGV :::::::::::::::::::::: XP_011 PDQFMTADETRNLQNVDMKIGV 640 650 >>XP_011518785 (OMIM: 107269,609027) PREDICTED: CD44 ant (658 aa) initn: 4183 init1: 2665 opt: 2956 Z-score: 2488.5 bits: 470.9 E(85289): 7.1e-132 Smith-Waterman score: 4257; 88.2% identity (88.3% similar) in 743 aa overlap (1-742:1-658) 10 20 30 40 50 60 pF1KE2 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATTLMSTSATATETATKRQE :::::::::::::::::::::::::::::::::::::::::: XP_011 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT------------------ 190 200 210 220 250 260 270 280 290 300 pF1KE2 TWDWFSWLFLPSESKNHLHTTTQMAGTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDD XP_011 ------------------------------------------------------------ 310 320 330 340 350 pF1KE2 EDFISSTISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMT-DVDRNGTTAYEGNW :::::::::::::::::::::::::::::::::::::: :::::::::::::: XP_011 -------ISTTPRAFDHTKQNQDWTQWNPSHSNPEVLLQTTTRMTADVDRNGTTAYEGNW 230 240 250 260 270 360 370 380 390 400 410 pF1KE2 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: XP_011 NPEAHPPLIHHEHHEEEETPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPKED 280 290 300 310 320 330 420 430 440 450 460 470 pF1KE2 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHST ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SHSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSI 340 350 360 370 380 390 480 490 500 510 520 530 pF1KE2 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRND 400 410 420 430 440 450 540 550 560 570 580 590 pF1KE2 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVN 460 470 480 490 500 510 600 610 620 630 640 650 pF1KE2 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLA 520 530 540 550 560 570 660 670 680 690 700 710 pF1KE2 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LALILAVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSE 580 590 600 610 620 630 720 730 740 pF1KE2 TPDQFMTADETRNLQNVDMKIGV ::::::::::::::::::::::: XP_011 TPDQFMTADETRNLQNVDMKIGV 640 650 742 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:58:25 2016 done: Tue Nov 8 16:58:26 2016 Total Scan time: 7.140 Total Display time: 0.110 Function used was FASTA [36.3.4 Apr, 2011]