FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2604, 179 aa 1>>>pF1KE2604 179 - 179 aa - 179 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9694+/-0.000662; mu= 11.0999+/- 0.040 mean_var=88.6896+/-17.572, 0's: 0 Z-trim(112.6): 6 B-trim: 28 in 1/50 Lambda= 0.136188 statistics sampled from 13326 (13332) to 13326 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.41), width: 16 Scan time: 1.890 The best scores are: opt bits E(32554) CCDS83072.1 ATAT1 gene_id:79969|Hs108|chr6 ( 323) 1154 235.7 2.1e-62 CCDS4683.2 ATAT1 gene_id:79969|Hs108|chr6 ( 333) 1154 235.7 2.1e-62 CCDS54978.1 ATAT1 gene_id:79969|Hs108|chr6 ( 409) 1154 235.8 2.5e-62 CCDS83073.1 ATAT1 gene_id:79969|Hs108|chr6 ( 300) 851 176.2 1.6e-44 CCDS59002.1 ATAT1 gene_id:79969|Hs108|chr6 ( 310) 851 176.2 1.7e-44 >>CCDS83072.1 ATAT1 gene_id:79969|Hs108|chr6 (323 aa) initn: 1172 init1: 1154 opt: 1154 Z-score: 1233.9 bits: 235.7 E(32554): 2.1e-62 Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:70-242) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: CCDS83 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP 160 170 180 190 200 210 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW ::::::::::::::::::::::. CCDS83 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 220 230 240 250 260 270 >>CCDS4683.2 ATAT1 gene_id:79969|Hs108|chr6 (333 aa) initn: 1172 init1: 1154 opt: 1154 Z-score: 1233.7 bits: 235.7 E(32554): 2.1e-62 Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:70-242) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: CCDS46 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP 160 170 180 190 200 210 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW ::::::::::::::::::::::. CCDS46 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 220 230 240 250 260 270 >>CCDS54978.1 ATAT1 gene_id:79969|Hs108|chr6 (409 aa) initn: 1154 init1: 1154 opt: 1154 Z-score: 1232.4 bits: 235.8 E(32554): 2.5e-62 Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:58-230) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: CCDS54 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP 150 160 170 180 190 200 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW ::::::::::::::::::::::. CCDS54 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 210 220 230 240 250 260 >>CCDS83073.1 ATAT1 gene_id:79969|Hs108|chr6 (300 aa) initn: 986 init1: 841 opt: 851 Z-score: 912.7 bits: 176.2 E(32554): 1.6e-44 Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:70-219) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: CCDS83 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP ::::::::::::::::::::::::::::::::::: ::: CCDS83 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA--------------------- 160 170 180 190 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW :::::::::::::::::::::. CCDS83 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 200 210 220 230 240 250 >>CCDS59002.1 ATAT1 gene_id:79969|Hs108|chr6 (310 aa) initn: 986 init1: 841 opt: 851 Z-score: 912.4 bits: 176.2 E(32554): 1.7e-44 Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:70-219) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: CCDS59 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP ::::::::::::::::::::::::::::::::::: ::: CCDS59 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA--------------------- 160 170 180 190 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW :::::::::::::::::::::. CCDS59 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 200 210 220 230 240 250 179 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:58:55 2016 done: Tue Nov 8 16:58:56 2016 Total Scan time: 1.890 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]