Result of FASTA (omim) for
pF1KE2626
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2626, 302 aa
1>>>pF1KE2626 302 - 302 aa - 302 aa
Library: /omim/omim.rfq.tfa
64369986 residues in 92320 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3111+/-0.00037; mu= 11.1290+/- 0.023
mean_var=104.9316+/-20.784, 0's: 0 Z-trim(116.2): 47 B-trim: 291 in 2/51
Lambda= 0.125205
statistics sampled from 28303 (28347) to 28303 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.307), width: 16
Scan time: 3.940
The best scores are: opt bits E(92320)
NP_060389 (OMIM: 604204) syntaxin-17 [Homo sapiens ( 302) 1924 358.0 1.4e-98
XP_011517123 (OMIM: 604204) syntaxin-17 isoform X1 ( 302) 1924 358.0 1.4e-98
XP_011517122 (OMIM: 604204) syntaxin-17 isoform X1 ( 302) 1924 358.0 1.4e-98
XP_016870364 (OMIM: 604204) syntaxin-17 isoform X2 ( 213) 1343 253.0 4.2e-67
XP_011517125 (OMIM: 604204) syntaxin-17 isoform X2 ( 213) 1343 253.0 4.2e-67
XP_024303361 (OMIM: 604204) syntaxin-17 isoform X2 ( 213) 1343 253.0 4.2e-67
>>NP_060389 (OMIM: 604204) syntaxin-17 [Homo sapiens] (302 aa)
initn: 1924 init1: 1924 opt: 1924 Z-score: 1891.4 bits: 358.0 E(92320): 1.4e-98
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 302 aa overlap (1-302:1-302)
10 20 30 40 50 60
pF1KE2 MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
250 260 270 280 290 300
pF1KE2 CS
::
NP_060 CS
>>XP_011517123 (OMIM: 604204) syntaxin-17 isoform X1 [Ho (302 aa)
initn: 1924 init1: 1924 opt: 1924 Z-score: 1891.4 bits: 358.0 E(92320): 1.4e-98
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 302 aa overlap (1-302:1-302)
10 20 30 40 50 60
pF1KE2 MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
250 260 270 280 290 300
pF1KE2 CS
::
XP_011 CS
>>XP_011517122 (OMIM: 604204) syntaxin-17 isoform X1 [Ho (302 aa)
initn: 1924 init1: 1924 opt: 1924 Z-score: 1891.4 bits: 358.0 E(92320): 1.4e-98
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 302 aa overlap (1-302:1-302)
10 20 30 40 50 60
pF1KE2 MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDKK
250 260 270 280 290 300
pF1KE2 CS
::
XP_011 CS
>>XP_016870364 (OMIM: 604204) syntaxin-17 isoform X2 [Ho (213 aa)
initn: 1343 init1: 1343 opt: 1343 Z-score: 1326.4 bits: 253.0 E(92320): 4.2e-67
Smith-Waterman score: 1343; 100.0% identity (100.0% similar) in 213 aa overlap (90-302:1-213)
60 70 80 90 100 110
pF1KE2 RTVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQ
::::::::::::::::::::::::::::::
XP_016 MIDPVKEEASAATAEFLQLHLESVEELKKQ
10 20 30
120 130 140 150 160 170
pF1KE2 FNDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FNDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE2 IELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALI
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE2 GGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDK
160 170 180 190 200 210
300
pF1KE2 KCS
:::
XP_016 KCS
>>XP_011517125 (OMIM: 604204) syntaxin-17 isoform X2 [Ho (213 aa)
initn: 1343 init1: 1343 opt: 1343 Z-score: 1326.4 bits: 253.0 E(92320): 4.2e-67
Smith-Waterman score: 1343; 100.0% identity (100.0% similar) in 213 aa overlap (90-302:1-213)
60 70 80 90 100 110
pF1KE2 RTVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQ
::::::::::::::::::::::::::::::
XP_011 MIDPVKEEASAATAEFLQLHLESVEELKKQ
10 20 30
120 130 140 150 160 170
pF1KE2 FNDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FNDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE2 IELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALI
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE2 GGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDK
160 170 180 190 200 210
300
pF1KE2 KCS
:::
XP_011 KCS
>>XP_024303361 (OMIM: 604204) syntaxin-17 isoform X2 [Ho (213 aa)
initn: 1343 init1: 1343 opt: 1343 Z-score: 1326.4 bits: 253.0 E(92320): 4.2e-67
Smith-Waterman score: 1343; 100.0% identity (100.0% similar) in 213 aa overlap (90-302:1-213)
60 70 80 90 100 110
pF1KE2 RTVQQLRSNIREIEKLCLKVRKDDLVLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQ
::::::::::::::::::::::::::::::
XP_024 MIDPVKEEASAATAEFLQLHLESVEELKKQ
10 20 30
120 130 140 150 160 170
pF1KE2 FNDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 FNDEETLLQPPLTRSMTVGGAFHTTEAEASSQSLTQIYALPEIPQDQNAAESWETLEADL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE2 IELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 IELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKYKLAALPVAGALI
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE2 GGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 GGMVGGPIGLLAGFKVAGIAAALGGGVLGFTGGKLIQRKKQKMMEKLTSSCPDLPSQTDK
160 170 180 190 200 210
300
pF1KE2 KCS
:::
XP_024 KCS
302 residues in 1 query sequences
64369986 residues in 92320 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:43:27 2019 done: Thu Oct 24 21:43:28 2019
Total Scan time: 3.940 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]