Result of FASTA (ccds) for
pF1KE2633
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2633, 862 aa
1>>>pF1KE2633 862 - 862 aa - 862 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.6770+/-0.00163; mu= -18.4612+/- 0.097
mean_var=456.5896+/-96.117, 0's: 0 Z-trim(107.8): 90 B-trim: 56 in 1/52
Lambda= 0.060022
statistics sampled from 9759 (9812) to 9759 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.301), width: 16
Scan time: 3.000
The best scores are: opt bits E(32554)
CCDS45592.1 RABEP1 gene_id:9135|Hs108|chr17 ( 862) 5422 485.2 2.2e-136
CCDS42243.1 RABEP1 gene_id:9135|Hs108|chr17 ( 829) 4835 434.3 4.2e-121
>>CCDS45592.1 RABEP1 gene_id:9135|Hs108|chr17 (862 aa)
initn: 5422 init1: 5422 opt: 5422 Z-score: 2562.2 bits: 485.2 E(32554): 2.2e-136
Smith-Waterman score: 5422; 100.0% identity (100.0% similar) in 862 aa overlap (1-862:1-862)
10 20 30 40 50 60
pF1KE2 MAQPGPASQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAQPGPASQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 MKETVRDYEHQFHLRLEQERTQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKETVRDYEHQFHLRLEQERTQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQED
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 AEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 LNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 MEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQEESSAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQEESSAQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 LSNEEEHLDSTRGSVHSLDAGLLLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSGSLQSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LSNEEEHLDSTRGSVHSLDAGLLLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSGSLQSK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 ALGYNYKAKSAGNLDESDFGPLVGADSVSENFDTASLGSLQMPSGFMLTKDQERAIKAMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALGYNYKAKSAGNLDESDFGPLVGADSVSENFDTASLGSLQMPSGFMLTKDQERAIKAMT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 PEQEETASLLSSVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PEQEETASLLSSVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 KQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 LRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 SLQQAEDFILPDTTEALRELVLKYREDIINVRTAADHVEEKLKAEILFLKEQIQAEQCLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SLQQAEDFILPDTTEALRELVLKYREDIINVRTAADHVEEKLKAEILFLKEQIQAEQCLK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 ENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 EQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS
790 800 810 820 830 840
850 860
pF1KE2 LERIRAILNDTKLTDINQLPET
::::::::::::::::::::::
CCDS45 LERIRAILNDTKLTDINQLPET
850 860
>>CCDS42243.1 RABEP1 gene_id:9135|Hs108|chr17 (829 aa)
initn: 4846 init1: 4797 opt: 4835 Z-score: 2287.7 bits: 434.3 E(32554): 4.2e-121
Smith-Waterman score: 5159; 96.2% identity (96.2% similar) in 862 aa overlap (1-862:1-829)
10 20 30 40 50 60
pF1KE2 MAQPGPASQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAQPGPASQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 MKETVRDYEHQFHLRLEQERTQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKETVRDYEHQFHLRLEQERTQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQED
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 AEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 LNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 MEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQEESSAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQEESSAQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 LSNEEEHLDSTRGSVHSLDAGLLLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSGSLQSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSNEEEHLDSTRGSVHSLDAGLLLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSGSLQSK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 ALGYNYKAKSAGNLDESDFGPLVGADSVSENFDTASLGSLQMPSGFMLTKDQERAIKAMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALGYNYKAKSAGNLDESDFGPLVGADSVSENFDTASLGSLQMPSGFMLTKDQERAIKAMT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 PEQEETASLLSSVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PEQEETASLLSSVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 KQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 LRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 SLQQAEDFILPDTTEALRELVLKYREDIINVRTAADHVEEKLKAEILFLKEQIQAEQCLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLQQAEDFILPDTTEALRELVLKYREDIINVRTAADHVEEKLKAEILFLKEQIQAEQCLK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 ENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLE
:::::::::::::::::::::::::::::::::::::
CCDS42 ENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQ-----------------------
730 740 750
790 800 810 820 830 840
pF1KE2 EQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ----------ATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS
760 770 780 790 800
850 860
pF1KE2 LERIRAILNDTKLTDINQLPET
::::::::::::::::::::::
CCDS42 LERIRAILNDTKLTDINQLPET
810 820
862 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:38:14 2016 done: Tue Nov 8 16:38:14 2016
Total Scan time: 3.000 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]