FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2700, 520 aa
  1>>>pF1KE2700     520 - 520 aa - 520 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.9637+/-0.000999; mu= -10.9757+/- 0.060
 mean_var=385.1636+/-77.263, 0's: 0 Z-trim(116.1): 5  B-trim: 0 in 0/52
 Lambda= 0.065351
 statistics sampled from 16722 (16725) to 16722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.514), width:  16
 Scan time:  4.140

The best scores are:                                      opt bits E(32554)
CCDS33043.2 SMG9 gene_id:56006|Hs108|chr19         ( 520) 3539 347.5 2.2e-95


>>CCDS33043.2 SMG9 gene_id:56006|Hs108|chr19              (520 aa)
 initn: 3539 init1: 3539 opt: 3539  Z-score: 1825.9  bits: 347.5 E(32554): 2.2e-95
Smith-Waterman score: 3539; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KE2 MSESGHSQPGLYGIERRRRWKEPGSGGPQNLSGPGGRERDYIAPWERERRDASEETSTSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSESGHSQPGLYGIERRRRWKEPGSGGPQNLSGPGGRERDYIAPWERERRDASEETSTSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 MQKTPIILSKPPAERSKQPPPPTAPAAPPAPAPLEKPIVLMKPREEGKGPVAVTGASTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQKTPIILSKPPAERSKQPPPPTAPAAPPAPAPLEKPIVLMKPREEGKGPVAVTGASTPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GTAPPPPAAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GTAPPPPAAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 IKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRTYVFRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRTYVFRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 QSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 EMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 TEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 FLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSM
              430       440       450       460       470       480

              490       500       510       520
pF1KE2 ARPQLSHTILTEKNWFHYAARIWDGVRKSSALAEYSRLLA
       ::::::::::::::::::::::::::::::::::::::::
CCDS33 ARPQLSHTILTEKNWFHYAARIWDGVRKSSALAEYSRLLA
              490       500       510       520




520 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jul  6 13:33:07 2017 done: Thu Jul  6 13:33:07 2017
 Total Scan time:  4.140 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]