FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2712, 180 aa 1>>>pF1KE2712 180 - 180 aa - 180 aa Library: /omim/omim.rfq.tfa 63781504 residues in 89704 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5336+/-0.000323; mu= 6.3655+/- 0.020 mean_var=315.6500+/-65.688, 0's: 0 Z-trim(125.1): 16 B-trim: 823 in 1/59 Lambda= 0.072189 statistics sampled from 49300 (49325) to 49300 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.55), width: 16 Scan time: 3.090 The best scores are: opt bits E(89704) NP_001318 (OMIM: 300156) cancer/testis antigen 1 [ ( 180) 1261 143.3 2.2e-34 NP_640343 (OMIM: 300657) cancer/testis antigen 1 [ ( 180) 1261 143.3 2.2e-34 NP_758965 (OMIM: 300396) cancer/testis antigen 2 i ( 180) 1084 124.8 7.6e-29 NP_066274 (OMIM: 300396) cancer/testis antigen 2 i ( 210) 789 94.2 1.5e-19 NP_006005 (OMIM: 300060,301006) EKC/KEOPS complex ( 143) 282 41.2 0.00094 >>NP_001318 (OMIM: 300156) cancer/testis antigen 1 [Homo (180 aa) initn: 1261 init1: 1261 opt: 1261 Z-score: 738.8 bits: 143.3 E(89704): 2.2e-34 Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180) 10 20 30 40 50 60 pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 130 140 150 160 170 180 >>NP_640343 (OMIM: 300657) cancer/testis antigen 1 [Homo (180 aa) initn: 1261 init1: 1261 opt: 1261 Z-score: 738.8 bits: 143.3 E(89704): 2.2e-34 Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180) 10 20 30 40 50 60 pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_640 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_640 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_640 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 130 140 150 160 170 180 >>NP_758965 (OMIM: 300396) cancer/testis antigen 2 isofo (180 aa) initn: 1084 init1: 1084 opt: 1084 Z-score: 639.2 bits: 124.8 E(89704): 7.6e-29 Smith-Waterman score: 1084; 85.6% identity (94.4% similar) in 180 aa overlap (1-180:1-180) 10 20 30 40 50 60 pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: NP_758 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: :: NP_758 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR ..::.::::::.: ::::::::::::::::::::::::::::::::::::::: :::::: NP_758 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 130 140 150 160 170 180 >>NP_066274 (OMIM: 300396) cancer/testis antigen 2 isofo (210 aa) initn: 789 init1: 789 opt: 789 Z-score: 472.5 bits: 94.2 E(89704): 1.5e-19 Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: NP_066 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: :: NP_066 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR ..::.::::::.: . . : NP_066 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP 130 140 150 160 170 180 >>NP_006005 (OMIM: 300060,301006) EKC/KEOPS complex subu (143 aa) initn: 324 init1: 135 opt: 282 Z-score: 188.8 bits: 41.2 E(89704): 0.00094 Smith-Waterman score: 288; 42.4% identity (63.9% similar) in 144 aa overlap (25-168:7-139) 10 20 30 40 50 60 pF1KE2 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA :. :: :: :. ::.. :: :. :..:.::: NP_006 MRDADADAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGA 10 20 30 70 80 90 100 110 120 pF1KE2 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG : : . . : .. .::: . : : :..:: ::.:::.:. ::: :: : NP_006 P--PAHAPGPGRDAAS--AARGSRMRPHIFTLSVPFPTPLEAEIAHGSLAPDAEPHQR-- 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE2 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR :. :..:::: ::..: : : : :..:. . :.::::.. : : : NP_006 VVGKDLTVSGRILVVRWKAEDCRLLRISVINFLDQLSLVVRTMQRFGPPVSR 100 110 120 130 140 180 residues in 1 query sequences 63781504 residues in 89704 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Jan 5 10:03:32 2018 done: Fri Jan 5 10:03:33 2018 Total Scan time: 3.090 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]