FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2762, 323 aa
  1>>>pF1KE2762     323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9511+/-0.000834; mu= 17.2546+/- 0.050
 mean_var=54.0338+/-10.993, 0's: 0 Z-trim(105.9): 16  B-trim: 0 in 0/48
 Lambda= 0.174478
 statistics sampled from 8766 (8774) to 8766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.263), width:  16
 Scan time:  1.120

The best scores are:                                      opt bits E(33420)
CCDS9956.1 DEGS2 gene_id:123099|Hs109|chr14        ( 323) 2276 580.8 5.1e-166
CCDS1540.1 DEGS1 gene_id:8560|Hs109|chr1           ( 323) 1589 407.9 5.8e-114


>>CCDS9956.1 DEGS2 gene_id:123099|Hs109|chr14             (323 aa)
 initn: 2276 init1: 2276 opt: 2276  Z-score: 3094.3  bits: 580.8 E(33420): 5.1e-166
Smith-Waterman score: 2276; 99.7% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KE2 MGNSASRSDFEWVYTDQPHTQRRKEILAKYPAIKALMRPDPRLKWAVLVLVLVQMLTCWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS99 MGNSASRSDFEWVYTDQPHTQRRKEILAKYPAIKALMRPDPRLKWAVLVLVLVQMLACWL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAARNRWLAVFANLPVGVPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAARNRWLAVFANLPVGVPY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 AASFKKYHVDHHRYLGGDGLDVDVPTRLEGWFFCTPARKLLWLVLQPFFYSLRPLCVHPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 AASFKKYHVDHHRYLGGDGLDVDVPTRLEGWFFCTPARKLLWLVLQPFFYSLRPLCVHPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 AVTRMEVLNTLVQLAADLAIFALWGLKPVVYLLASSFLGLGLHPISGHFVAEHYMFLKGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 AVTRMEVLNTLVQLAADLAIFALWGLKPVVYLLASSFLGLGLHPISGHFVAEHYMFLKGH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ETYSYYGPLNWITFNVGYHVEHHDFPSIPGYNLPLVRKIAPEYYDHLPQHHSWVKVLWDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ETYSYYGPLNWITFNVGYHVEHHDFPSIPGYNLPLVRKIAPEYYDHLPQHHSWVKVLWDF
              250       260       270       280       290       300

              310       320   
pF1KE2 VFEDSLGPYARVKRVYRLAKDGL
       :::::::::::::::::::::::
CCDS99 VFEDSLGPYARVKRVYRLAKDGL
              310       320   

>>CCDS1540.1 DEGS1 gene_id:8560|Hs109|chr1                (323 aa)
 initn: 1589 init1: 1589 opt: 1589  Z-score: 2159.7  bits: 407.9 E(33420): 5.8e-114
Smith-Waterman score: 1589; 65.0% identity (90.4% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE2 MGNSASRSDFEWVYTDQPHTQRRKEILAKYPAIKALMRPDPRLKWAVLVLVLVQMLTCWL
       ::. .:: :::::::::::..::.::::::: ::.::.::: : : ....::.:. . ..
CCDS15 MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAARNRWLAVFANLPVGVPY
       :. : :.:..: :::::.:.:::.:::::.:.::::::. .:  :::...:::::.:.::
CCDS15 VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 AASFKKYHVDHHRYLGGDGLDVDVPTRLEGWFFCTPARKLLWLVLQPFFYSLRPLCVHPK
       . :::.::.:::::::.::.:::.:: .:::::::  ::..:..:::.::..::: ..::
CCDS15 SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 AVTRMEVLNTLVQLAADLAIFALWGLKPVVYLLASSFLGLGLHPISGHFVAEHYMFLKGH
        .: .::.::..:.. :. :. . :.: .::.::.:.::::::::::::.::::::::::
CCDS15 PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ETYSYYGPLNWITFNVGYHVEHHDFPSIPGYNLPLVRKIAPEYYDHLPQHHSWVKVLWDF
       :::::::::: .::::::: ::::::.::: .:::::::: ::::.::...::.:::.::
CCDS15 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDF
              250       260       270       280       290       300

              310       320   
pF1KE2 VFEDSLGPYARVKRVYRLAKDGL
       :..:...::.:.::         
CCDS15 VMDDTISPYSRMKRHQKGEMVLE
              310       320   




323 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct  3 17:23:50 2019 done: Thu Oct  3 17:23:51 2019
 Total Scan time:  1.120 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]