FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2763, 118 aa
  1>>>pF1KE2763     118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2929+/-0.000257; mu= 15.7396+/- 0.016
 mean_var=56.2024+/-11.560, 0's: 0 Z-trim(120.4): 2  B-trim: 1112 in 1/49
 Lambda= 0.171079
 statistics sampled from 37097 (37099) to 37097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.402), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(92320)
XP_011521621 (OMIM: 611026,612319) fatty acid 2-hy ( 292)  786 201.3 7.9e-52
NP_077282 (OMIM: 611026,612319) fatty acid 2-hydro ( 372)  786 201.4 9.5e-52


>>XP_011521621 (OMIM: 611026,612319) fatty acid 2-hydrox  (292 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 1052.1  bits: 201.3 E(92320): 7.9e-52
Smith-Waterman score: 786; 98.2% identity (99.1% similar) in 113 aa overlap (6-118:180-292)

                                        10        20        30     
pF1KE2                          MPKPLHLQAPFDGSRLVFPPVPASLVIGVFYLCMQ
                                     : .:::::::::::::::::::::::::::
XP_011 EYLIHRFLFHMKPPSDSYYLIMLHFVMHGQHHKAPFDGSRLVFPPVPASLVIGVFYLCMQ
     150       160       170       180       190       200         

          40        50        60        70        80        90     
pF1KE2 LILPEAVGGTVFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYSLKAHHVKHHFAHQKSGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LILPEAVGGTVFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYSLKAHHVKHHFAHQKSGFG
     210       220       230       240       250       260         

         100       110        
pF1KE2 ISTKLWDYCFHTLTPEKPHLKTQ
       :::::::::::::::::::::::
XP_011 ISTKLWDYCFHTLTPEKPHLKTQ
     270       280       290  

>>NP_077282 (OMIM: 611026,612319) fatty acid 2-hydroxyla  (372 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 1050.7  bits: 201.4 E(92320): 9.5e-52
Smith-Waterman score: 786; 98.2% identity (99.1% similar) in 113 aa overlap (6-118:260-372)

                                        10        20        30     
pF1KE2                          MPKPLHLQAPFDGSRLVFPPVPASLVIGVFYLCMQ
                                     : .:::::::::::::::::::::::::::
NP_077 EYLIHRFLFHMKPPSDSYYLIMLHFVMHGQHHKAPFDGSRLVFPPVPASLVIGVFYLCMQ
     230       240       250       260       270       280         

          40        50        60        70        80        90     
pF1KE2 LILPEAVGGTVFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYSLKAHHVKHHFAHQKSGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 LILPEAVGGTVFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYSLKAHHVKHHFAHQKSGFG
     290       300       310       320       330       340         

         100       110        
pF1KE2 ISTKLWDYCFHTLTPEKPHLKTQ
       :::::::::::::::::::::::
NP_077 ISTKLWDYCFHTLTPEKPHLKTQ
     350       360       370  




118 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct  3 17:24:23 2019 done: Thu Oct  3 17:24:23 2019
 Total Scan time:  2.700 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]