FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2790, 174 aa
  1>>>pF1KE2790     174 - 174 aa - 174 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3197+/-0.000674; mu= 6.0985+/- 0.041
 mean_var=160.7761+/-31.326, 0's: 0 Z-trim(116.5): 29  B-trim: 0 in 0/54
 Lambda= 0.101149
 statistics sampled from 17332 (17360) to 17332 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.519), width:  16
 Scan time:  1.010

The best scores are:                                      opt bits E(33420)
CCDS45139.1 JDP2 gene_id:122953|Hs109|chr14        ( 174) 1138 176.3 8.4e-45
CCDS9842.1 JDP2 gene_id:122953|Hs109|chr14         ( 163) 1053 163.9 4.3e-41
CCDS1506.1 ATF3 gene_id:467|Hs109|chr1             ( 181)  435 73.8 6.6e-14
CCDS58059.1 ATF3 gene_id:467|Hs109|chr1            ( 124)  426 72.3 1.2e-13


>>CCDS45139.1 JDP2 gene_id:122953|Hs109|chr14             (174 aa)
 initn: 1138 init1: 1138 opt: 1138  Z-score: 918.0  bits: 176.3 E(33420): 8.4e-45
Smith-Waterman score: 1138; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)

               10        20        30        40        50        60
pF1KE2 MVAGWPATPPAMMPGQIPDPSVTTGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MVAGWPATPPAMMPGQIPDPSVTTGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LHFLEVKLGKRPQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LHFLEVKLGKRPQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLEL
               70        80        90       100       110       120

              130       140       150       160       170    
pF1KE2 MNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
              130       140       150       160       170    

>>CCDS9842.1 JDP2 gene_id:122953|Hs109|chr14              (163 aa)
 initn: 1053 init1: 1053 opt: 1053  Z-score: 851.4  bits: 163.9 E(33420): 4.3e-41
Smith-Waterman score: 1053; 100.0% identity (100.0% similar) in 163 aa overlap (12-174:1-163)

               10        20        30        40        50        60
pF1KE2 MVAGWPATPPAMMPGQIPDPSVTTGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAP
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98            MMPGQIPDPSVTTGSLPGLGPLTGLPSSALTVEELKYADIRNLGAMIAP
                          10        20        30        40         

               70        80        90       100       110       120
pF1KE2 LHFLEVKLGKRPQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LHFLEVKLGKRPQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLEL
      50        60        70        80        90       100         

              130       140       150       160       170    
pF1KE2 MNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
     110       120       130       140       150       160   

>>CCDS1506.1 ATF3 gene_id:467|Hs109|chr1                  (181 aa)
 initn: 550 init1: 419 opt: 435  Z-score: 363.4  bits: 73.8 E(33420): 6.6e-14
Smith-Waterman score: 445; 48.8% identity (73.3% similar) in 172 aa overlap (14-173:6-176)

               10        20         30              40        50   
pF1KE2 MVAGWPATPPAMMPGQIPDPSVTTGSL-PGLGPLTGL------PSSALTVEELKYADIRN
                    :::.    :..... : :.:  .:        . .. :::..: :.:
CCDS15         MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQN
                       10        20        30        40         50 

            60         70            80        90       100        
pF1KE2 LGAMIAPLHFLE-VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERT
                 :: : .. ::  :   :.:.  ::.::.:::::.::.:::.:::::::.:
CCDS15 KHLCHRMSSALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKT
              60        70        80        90       100       110 

      110       120       130       140       150       160        
pF1KE2 EFLQRESERLELMNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLL
       : ::.:::.:: .:::::.::::::.:.:.:: ::: ::::::::... .:::.: : ..
CCDS15 ECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFI
             120       130       140       150       160       170 

      170        
pF1KE2 EQLEKK    
       .:...     
CCDS15 QQIKEGTLQS
             180 

>>CCDS58059.1 ATF3 gene_id:467|Hs109|chr1                 (124 aa)
 initn: 520 init1: 419 opt: 426  Z-score: 358.4  bits: 72.3 E(33420): 1.2e-13
Smith-Waterman score: 426; 60.7% identity (85.7% similar) in 112 aa overlap (66-173:8-119)

          40        50        60        70            80        90 
pF1KE2 LPSSALTVEELKYADIRNLGAMIAPLHFLEVKLGKRPQPV---KSEL-DEEEERRKRRRE
                                     : .. ::  :   :.:.  ::.::.:::::
CCDS58                        MSSALESVTVSDRPLGVSITKAEVAPEEDERKKRRRE
                                      10        20        30       

             100       110       120       130       140       150 
pF1KE2 KNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKQERQQLILMLNRHRPTCI
       .::.:::.:::::::.:: ::.:::.:: .:::::.::::::.:.:.:: ::: ::::::
CCDS58 RNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCI
        40        50        60        70        80        90       

             160       170        
pF1KE2 VRTDSVKTPESEGNPLLEQLEKK    
       ::... .:::.: : ...:...     
CCDS58 VRAQNGRTPEDERNLFIQQIKEGTLQS
       100       110       120    




174 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Feb 19 20:42:22 2021 done: Fri Feb 19 20:42:22 2021
 Total Scan time:  1.010 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]