FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2802, 118 aa
  1>>>pF1KE2802     118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3426+/-0.000499; mu= 10.5121+/- 0.030
 mean_var=61.5509+/-12.188, 0's: 0 Z-trim(114.2): 7  B-trim: 78 in 1/51
 Lambda= 0.163477
 statistics sampled from 14932 (14939) to 14932 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.447), width:  16
 Scan time:  0.810

The best scores are:                                      opt bits E(33420)
CCDS45387.1 ELOB gene_id:6923|Hs109|chr16          ( 118)  783 191.9 7.7e-50
CCDS32374.1 ELOB gene_id:6923|Hs109|chr16          ( 161)  777 190.6 2.7e-49


>>CCDS45387.1 ELOB gene_id:6923|Hs109|chr16               (118 aa)
 initn: 783 init1: 783 opt: 783  Z-score: 1008.4  bits: 191.9 E(33420): 7.7e-50
Smith-Waterman score: 783; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE2 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE2 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ
               70        80        90       100       110        

>>CCDS32374.1 ELOB gene_id:6923|Hs109|chr16               (161 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 998.7  bits: 190.6 E(33420): 2.7e-49
Smith-Waterman score: 777; 99.2% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE2 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE2 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ  
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.  
CCDS32 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVHLH
               70        80        90       100       110       120

CCDS32 VHSQTMAKSRNTSWSQCPGLTACSTREPQDGPTQVHPRWGL
              130       140       150       160 




118 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Aug 16 14:40:33 2021 done: Mon Aug 16 14:40:33 2021
 Total Scan time:  0.810 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]