FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3008, 89 aa
  1>>>pF1KE3008 89 - 89 aa - 89 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4112+/-0.000617; mu= 13.2240+/- 0.037
 mean_var=49.7352+/- 9.835, 0's: 0 Z-trim(109.1): 27  B-trim: 0 in 0/50
 Lambda= 0.181862
 statistics sampled from 10653 (10674) to 10653 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.328), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS10710.1 PYDC1 gene_id:260434|Hs108|chr16       (  89)  552 151.6 6.1e-38
CCDS10709.1 PYCARD gene_id:29108|Hs108|chr16       ( 176)  344 97.2 2.8e-21
CCDS10708.1 PYCARD gene_id:29108|Hs108|chr16       ( 195)  344 97.2 3.1e-21


>>CCDS10710.1 PYDC1 gene_id:260434|Hs108|chr16            (89 aa)
 initn: 552 init1: 552 opt: 552  Z-score: 794.6  bits: 151.6 E(32554): 6.1e-38
Smith-Waterman score: 552; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE3 MGTKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGTKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASY
               10        20        30        40        50        60

               70        80         
pF1KE3 YEDYAAELVVAVLRDMRMLEEAARLQRAA
       :::::::::::::::::::::::::::::
CCDS10 YEDYAAELVVAVLRDMRMLEEAARLQRAA
               70        80         

>>CCDS10709.1 PYCARD gene_id:29108|Hs108|chr16            (176 aa)
 initn: 344 init1: 344 opt: 344  Z-score: 495.4  bits: 97.2 E(32554): 2.8e-21
Smith-Waterman score: 344; 64.8% identity (81.8% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE3 MGTKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASY
       ::  :.::: .::::: :::::::.:: .::::::. ::::::: ..: .:::::::. :
CCDS10 MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFY
               10        20        30        40        50        60

               70        80                                        
pF1KE3 YEDYAAELVVAVLRDMRMLEEAARLQRAA                               
        : :.:::.. ::::: . : :..:: :                                
CCDS10 LETYGAELTANVLRDMGLQEMAGQLQAATHQGLHFIDQHRAALIARVTNVEWLLDALYGK
               70        80        90       100       110       120

>>CCDS10708.1 PYCARD gene_id:29108|Hs108|chr16            (195 aa)
 initn: 344 init1: 344 opt: 344  Z-score: 494.7  bits: 97.2 E(32554): 3.1e-21
Smith-Waterman score: 344; 64.8% identity (81.8% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE3 MGTKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASY
       ::  :.::: .::::: :::::::.:: .::::::. ::::::: ..: .:::::::. :
CCDS10 MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFY
               10        20        30        40        50        60

               70        80                                        
pF1KE3 YEDYAAELVVAVLRDMRMLEEAARLQRAA                               
        : :.:::.. ::::: . : :..:: :                                
CCDS10 LETYGAELTANVLRDMGLQEMAGQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRA
               70        80        90       100       110       120




89 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:46:38 2016 done: Mon Nov  7 20:46:38 2016
 Total Scan time:  1.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]