Result of FASTA (ccds) for
pF1KE3023
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3023, 138 aa
1>>>pF1KE3023 138 - 138 aa - 138 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1515+/-0.000772; mu= 12.5517+/- 0.047
mean_var=69.3103+/-14.017, 0's: 0 Z-trim(108.6): 18 B-trim: 52 in 1/49
Lambda= 0.154055
statistics sampled from 10427 (10439) to 10427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.312), width: 16
Scan time: 0.690
The best scores are: opt bits E(33420)
CCDS880.1 TSHB gene_id:7252|Hs109|chr1 ( 138) 977 225.4 8.7e-60
CCDS7868.1 FSHB gene_id:2488|Hs109|chr11 ( 129) 378 92.3 9.8e-20
CCDS12748.1 LHB gene_id:3972|Hs109|chr19 ( 141) 355 87.2 3.6e-18
CCDS12751.2 CGB1 gene_id:114335|Hs109|chr19 ( 155) 337 83.2 6.3e-17
CCDS12750.2 CGB2 gene_id:114336|Hs109|chr19 ( 163) 337 83.2 6.6e-17
CCDS12753.1 CGB8 gene_id:94115|Hs109|chr19 ( 165) 337 83.3 6.6e-17
CCDS12749.1 CGB3 gene_id:1082|Hs109|chr19 ( 165) 337 83.3 6.6e-17
CCDS12752.1 CGB5 gene_id:93659|Hs109|chr19 ( 165) 337 83.3 6.6e-17
CCDS33071.1 CGB7 gene_id:94027|Hs109|chr19 ( 165) 336 83.0 7.7e-17
>>CCDS880.1 TSHB gene_id:7252|Hs109|chr1 (138 aa)
initn: 977 init1: 977 opt: 977 Z-score: 1187.0 bits: 225.4 E(33420): 8.7e-60
Smith-Waterman score: 977; 99.3% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KE3 MTALFLMSMLFGLACGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKL
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MTALFLMSMLFGLTCGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 FLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAI
70 80 90 100 110 120
130
pF1KE3 KTNYCTKPQKSYLVGFSV
::::::::::::::::::
CCDS88 KTNYCTKPQKSYLVGFSV
130
>>CCDS7868.1 FSHB gene_id:2488|Hs109|chr11 (129 aa)
initn: 402 init1: 224 opt: 378 Z-score: 468.0 bits: 92.3 E(33420): 9.8e-20
Smith-Waterman score: 378; 40.2% identity (72.1% similar) in 122 aa overlap (7-126:4-123)
10 20 30 40 50
pF1KE3 MTALFLMSMLFGLACGQAM--SFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDING
....: . : .:. . : :. :. ::..:: .:..:::: :::::.:::.
CCDS78 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVY
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 KLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHE
: : : .::.....:.::..::: :. ..:::: .:.::::..: .:: .
CCDS78 KD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVR
60 70 80 90 100 110
120 130
pF1KE3 AIKTNYCTKPQKSYLVGFSV
.. .::.
CCDS78 GLGPSYCSFGEMKE
120
>>CCDS12748.1 LHB gene_id:3972|Hs109|chr19 (141 aa)
initn: 369 init1: 225 opt: 355 Z-score: 439.8 bits: 87.2 E(33420): 3.6e-18
Smith-Waterman score: 355; 41.7% identity (61.4% similar) in 132 aa overlap (4-134:10-139)
10 20 30 40 50
pF1KE3 MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYCMT
:.:.:: . : . . .: : . . .:.. : :.:.::::::::: :
CCDS12 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 RDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYS
. :: : : :::::: ......:::: : : :.::::::.:: : . :
CCDS12 MMRVLQAVLP--PLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTS
70 80 90 100 110
120 130
pF1KE3 DCIHEAIKTNYCTKPQKSYLVGFSV
:: . : .:: : :.
CCDS12 DCGGPKDHPLTCDHPQLSGLLFL
120 130 140
>>CCDS12751.2 CGB1 gene_id:114335|Hs109|chr19 (155 aa)
initn: 321 init1: 197 opt: 337 Z-score: 417.6 bits: 83.2 E(33420): 6.3e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:8-132)
10 20 30 40 50
pF1KE3 MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--MT
:.:.:: : . . : : . :. .:.. : :.:.::::::::: ::
CCDS12 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 RDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYS
: ..: :: :: : ::.::: ......:::: : : :: :::::.:. : . .
CCDS12 RVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
70 80 90 100 110
120 130
pF1KE3 DCIHEAIKTNYCTKPQKSYLVGFSV
:: . : :.
CCDS12 DCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
120 130 140 150
>>CCDS12750.2 CGB2 gene_id:114336|Hs109|chr19 (163 aa)
initn: 321 init1: 197 opt: 337 Z-score: 417.3 bits: 83.2 E(33420): 6.6e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:8-132)
10 20 30 40 50
pF1KE3 MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--MT
:.:.:: : . . : : . :. .:.. : :.:.::::::::: ::
CCDS12 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 RDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYS
: ..: :: :: : ::.::: ......:::: : : :: :::::.:. : . .
CCDS12 RVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
70 80 90 100 110
120 130
pF1KE3 DCIHEAIKTNYCTKPQKSYLVGFSV
:: . : :.
CCDS12 DCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
>>CCDS12753.1 CGB8 gene_id:94115|Hs109|chr19 (165 aa)
initn: 321 init1: 197 opt: 337 Z-score: 417.2 bits: 83.3 E(33420): 6.6e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:10-134)
10 20 30 40 50
pF1KE3 MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--
:.:.:: : . . : : . :. .:.. : :.:.:::::::::
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 MTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTD
::: ..: :: :: : ::.::: ......:::: : : :: :::::.:. : .
CCDS12 MTRVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRS
70 80 90 100 110
120 130
pF1KE3 YSDCIHEAIKTNYCTKPQKSYLVGFSV
.:: . : :.
CCDS12 TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
>>CCDS12749.1 CGB3 gene_id:1082|Hs109|chr19 (165 aa)
initn: 321 init1: 197 opt: 337 Z-score: 417.2 bits: 83.3 E(33420): 6.6e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:10-134)
10 20 30 40 50
pF1KE3 MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--
:.:.:: : . . : : . :. .:.. : :.:.:::::::::
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 MTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTD
::: ..: :: :: : ::.::: ......:::: : : :: :::::.:. : .
CCDS12 MTRVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRS
70 80 90 100 110
120 130
pF1KE3 YSDCIHEAIKTNYCTKPQKSYLVGFSV
.:: . : :.
CCDS12 TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
>>CCDS12752.1 CGB5 gene_id:93659|Hs109|chr19 (165 aa)
initn: 321 init1: 197 opt: 337 Z-score: 417.2 bits: 83.3 E(33420): 6.6e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:10-134)
10 20 30 40 50
pF1KE3 MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--
:.:.:: : . . : : . :. .:.. : :.:.:::::::::
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 MTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTD
::: ..: :: :: : ::.::: ......:::: : : :: :::::.:. : .
CCDS12 MTRVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRS
70 80 90 100 110
120 130
pF1KE3 YSDCIHEAIKTNYCTKPQKSYLVGFSV
.:: . : :.
CCDS12 TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
>>CCDS33071.1 CGB7 gene_id:94027|Hs109|chr19 (165 aa)
initn: 321 init1: 197 opt: 336 Z-score: 416.0 bits: 83.0 E(33420): 7.7e-17
Smith-Waterman score: 336; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:10-134)
10 20 30 40 50
pF1KE3 MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--
:.:.:: : . . : : . :. .:.. : :.:.:::::::::
CCDS33 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 MTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTD
::: ..: :: :: : ::.::: ......:::: : : :: :::::.:. : .
CCDS33 MTRVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRS
70 80 90 100 110
120 130
pF1KE3 YSDCIHEAIKTNYCTKPQKSYLVGFSV
.:: . : :.
CCDS33 TTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
138 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Jun 20 10:38:23 2019 done: Thu Jun 20 10:38:23 2019
Total Scan time: 0.690 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]