FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3356, 1048 aa
  1>>>pF1KE3356     1048 - 1048 aa - 1048 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.8643+/-0.00128; mu= -23.5527+/- 0.074
 mean_var=749.9521+/-193.883, 0's: 0 Z-trim(112.3): 78  B-trim: 0 in 0/53
 Lambda= 0.046834
 statistics sampled from 13157 (13214) to 13157 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.395), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(33420)
CCDS13443.1 ZNF217 gene_id:7764|Hs109|chr20        (1048) 7189 502.6 1.9e-141


>>CCDS13443.1 ZNF217 gene_id:7764|Hs109|chr20             (1048 aa)
 initn: 7189 init1: 7189 opt: 7189  Z-score: 2653.2  bits: 502.6 E(33420): 1.9e-141
Smith-Waterman score: 7189; 100.0% identity (100.0% similar) in 1048 aa overlap (1-1048:1-1048)

               10        20        30        40        50        60
pF1KE3 MQSKVTGNMPTQSLLMYMDGPEVIGSSLGSPMEMEDALSMKGTAVVPFRATQEKNVIQIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MQSKVTGNMPTQSLLMYMDGPEVIGSSLGSPMEMEDALSMKGTAVVPFRATQEKNVIQIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GYMPLDCMFCSQTFTHSEDLNKHVLMQHRPTLCEPAVLRVEAEYLSPLDKSQVRTEPPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GYMPLDCMFCSQTFTHSEDLNKHVLMQHRPTLCEPAVLRVEAEYLSPLDKSQVRTEPPKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KNCKENEFSCEVCGQTFRVAFDVEIHMRTHKDSFTYGCNMCGRRFKEPWFLKNHMRTHNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KNCKENEFSCEVCGQTFRVAFDVEIHMRTHKDSFTYGCNMCGRRFKEPWFLKNHMRTHNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KSGARSKLQQGLESSPATINEVVQVHAAESISSPYKICMVCGFLFPNKESLIEHRKVHTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KSGARSKLQQGLESSPATINEVVQVHAAESISSPYKICMVCGFLFPNKESLIEHRKVHTK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 KTAFGTSSAQTDSPQGGMPSSREDFLQLFNLRPKSHPETGKKPVRCIPQLDPFTTFQAWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KTAFGTSSAQTDSPQGGMPSSREDFLQLFNLRPKSHPETGKKPVRCIPQLDPFTTFQAWQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LATKGKVAICQEVKESGQEGSTDNDDSSSEKELGETNKGSCAGLSQEKEKCKHSHGEAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LATKGKVAICQEVKESGQEGSTDNDDSSSEKELGETNKGSCAGLSQEKEKCKHSHGEAPS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 VDADPKLPSSKEKPTHCSECGKAFRTYHQLVLHSRVHKKDRRAGAESPTMSVDGRQPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDADPKLPSSKEKPTHCSECGKAFRTYHQLVLHSRVHKKDRRAGAESPTMSVDGRQPGTC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 SPDLAAPLDENGAVDRGEGGSEDGSEDGLPEGIHLDKNDDGGKIKHLTSSRECSYCGKFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPDLAAPLDENGAVDRGEGGSEDGSEDGLPEGIHLDKNDDGGKIKHLTSSRECSYCGKFF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 RSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHKEKQTDVAAEVKNDGKNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHKEKQTDVAAEVKNDGKNQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 DTEDALLTADSAQTKNLKRFFDGAKDVTGSPPAKQLKEMPSVFQNVLGSAVLSPAHKDTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DTEDALLTADSAQTKNLKRFFDGAKDVTGSPPAKQLKEMPSVFQNVLGSAVLSPAHKDTQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 DFHKNAADDSADKVNKNPTPAYLDLLKKRSAVETQANNLICRTKADVTPPPDGSTTHNLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DFHKNAADDSADKVNKNPTPAYLDLLKKRSAVETQANNLICRTKADVTPPPDGSTTHNLE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 VSPKEKQTETAADCRYRPSVDCHEKPLNLSVGALHNCPAISLSKSLIPSITCPFCTFKTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VSPKEKQTETAADCRYRPSVDCHEKPLNLSVGALHNCPAISLSKSLIPSITCPFCTFKTF
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE3 YPEVLMMHQRLEHKYNPDVHKNCRNKSLLRSRRTGCPPALLGKDVPPLSSFCKPKPKSAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YPEVLMMHQRLEHKYNPDVHKNCRNKSLLRSRRTGCPPALLGKDVPPLSSFCKPKPKSAF
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE3 PAQSKSLPSAKGKQSPPGPGKAPLTSGIDSSTLAPSNLKSHRPQQNVGVQGAATRQQQSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PAQSKSLPSAKGKQSPPGPGKAPLTSGIDSSTLAPSNLKSHRPQQNVGVQGAATRQQQSE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE3 MFPKTSVSPAPDKTKRPETKLKPLPVAPSQPTLGSSNINGSIDYPAKNDSPWAPPGRDYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFPKTSVSPAPDKTKRPETKLKPLPVAPSQPTLGSSNINGSIDYPAKNDSPWAPPGRDYF
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE3 CNRSASNTAAEFGEPLPKRLKSSVVALDVDQPGANYRRGYDLPKYHMVRGITSLLPQDCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CNRSASNTAAEFGEPLPKRLKSSVVALDVDQPGANYRRGYDLPKYHMVRGITSLLPQDCV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE3 YPSQALPPKPRFLSSSEVDSPNVLTVQKPYGGSGPLYTCVPAGSPASSSTLEGKRPVSYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YPSQALPPKPRFLSSSEVDSPNVLTVQKPYGGSGPLYTCVPAGSPASSSTLEGKRPVSYQ
              970       980       990      1000      1010      1020

             1030      1040        
pF1KE3 HLSNSMAQKRNYENFIGNAHYRPNDKKT
       ::::::::::::::::::::::::::::
CCDS13 HLSNSMAQKRNYENFIGNAHYRPNDKKT
             1030      1040        




1048 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:56:40 2019 done: Thu Oct 24 21:56:41 2019
 Total Scan time:  2.460 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]