Result of FASTA (ccds) for
pF1KE3379
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3379, 1130 aa
1>>>pF1KE3379 1130 - 1130 aa - 1130 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4215+/-0.00112; mu= 7.8258+/- 0.067
mean_var=188.3974+/-37.152, 0's: 0 Z-trim(109.2): 44 B-trim: 0 in 0/51
Lambda= 0.093441
statistics sampled from 10718 (10751) to 10718 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.33), width: 16
Scan time: 5.860
The best scores are: opt bits E(32554)
CCDS10544.1 CIITA gene_id:4261|Hs108|chr16 (1130) 7557 1032.4 0
CCDS73826.1 CIITA gene_id:4261|Hs108|chr16 (1131) 7540 1030.1 0
CCDS66943.1 CIITA gene_id:4261|Hs108|chr16 ( 546) 1547 222.0 3e-57
>>CCDS10544.1 CIITA gene_id:4261|Hs108|chr16 (1130 aa)
initn: 7557 init1: 7557 opt: 7557 Z-score: 5515.5 bits: 1032.4 E(32554): 0
Smith-Waterman score: 7557; 99.9% identity (100.0% similar) in 1130 aa overlap (1-1130:1-1130)
10 20 30 40 50 60
pF1KE3 MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSSSSLSCLNLPEGPIQFVPTISTLPHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSSSSLSCLNLPEGPIQFVPTISTLPHGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 WQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTSPDRPGSTSPFAPSATDLPSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTSPDRPGSTSPFAPSATDLPSM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWPEPVEQFYRSLQDTYGAEPAGPDGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWPEPVEQFYRSLQDTYGAEPAGPDGIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 VEVDLVQARLERSSSKSLERELATPDWAERQLAQGGLAEVLLAAKEHRRPRETRVIAVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VEVDLVQARLERSSSKSLERELATPDWAERQLAQGGLAEVLLAAKEHRRPRETRVIAVLG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 KAGQGKSYWAGAVSRAWACGRLPQYDFVFSVPCHCLNRPGDAYGLQDLLFSLGPQPLVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KAGQGKSYWAGAVSRAWACGRLPQYDFVFSVPCHCLNRPGDAYGLQDLLFSLGPQPLVAA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 DEVFSHILKRPDRVLLILDGFEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKKLLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DEVFSHILKRPDRVLLILDGFEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKKLLRG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 CTLLLTARPRGRLVQSLSKADALFELSGFSMEQAQAYVMRYFESSGMTEHQDRALTLLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CTLLLTARPRGRLVQSLSKADALFELSGFSMEQAQAYVMRYFESSGMTEHQDRALTLLRD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 RPLLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALDSPPGALAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RPLLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALDSPPGALAEL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 AKLAWELGRRHQSTLQEDQFPSADVRTWAMAKGLVQHPPRAAESELAFPSFLLQCFLGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AKLAWELGRRHQSTLQEDQFPSADVRTWAMAKGLVQHPPRAAESELAFPSFLLQCFLGAL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 WLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPPARCLGALLGPSAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPPARCLGALLGPSAAA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE3 SVDRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAGIWQHVVQELPGRLSFLGTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVDRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAGIWQHVVQELPGRLSFLGTRL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE3 TPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTRFRAALSDTVALWESLR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS10 TPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTRFRAALSDTVALWESLQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE3 QHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE3 EFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLETL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE3 NLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQ
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130
pF1KE3 YNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
1090 1100 1110 1120 1130
>>CCDS73826.1 CIITA gene_id:4261|Hs108|chr16 (1131 aa)
initn: 7538 init1: 6737 opt: 7540 Z-score: 5503.1 bits: 1030.1 E(32554): 0
Smith-Waterman score: 7540; 99.7% identity (99.9% similar) in 1131 aa overlap (1-1130:1-1131)
10 20 30 40 50 60
pF1KE3 MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEE
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 EIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIF-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 KHIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDC
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EHIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDC
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 STLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSSSSLSCLNLPEGPIQFVPTISTLPHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 STLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSSSSLSCLNLPEGPIQFVPTISTLPHG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 LWQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTSPDRPGSTSPFAPSATDLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LWQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTSPDRPGSTSPFAPSATDLPS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 MPEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWPEPVEQFYRSLQDTYGAEPAGPDGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MPEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWPEPVEQFYRSLQDTYGAEPAGPDGI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 LVEVDLVQARLERSSSKSLERELATPDWAERQLAQGGLAEVLLAAKEHRRPRETRVIAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LVEVDLVQARLERSSSKSLERELATPDWAERQLAQGGLAEVLLAAKEHRRPRETRVIAVL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 GKAGQGKSYWAGAVSRAWACGRLPQYDFVFSVPCHCLNRPGDAYGLQDLLFSLGPQPLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GKAGQGKSYWAGAVSRAWACGRLPQYDFVFSVPCHCLNRPGDAYGLQDLLFSLGPQPLVA
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE3 ADEVFSHILKRPDRVLLILDGFEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKKLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ADEVFSHILKRPDRVLLILDGFEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKKLLR
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE3 GCTLLLTARPRGRLVQSLSKADALFELSGFSMEQAQAYVMRYFESSGMTEHQDRALTLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GCTLLLTARPRGRLVQSLSKADALFELSGFSMEQAQAYVMRYFESSGMTEHQDRALTLLR
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE3 DRPLLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALDSPPGALAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DRPLLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALDSPPGALAE
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE3 LAKLAWELGRRHQSTLQEDQFPSADVRTWAMAKGLVQHPPRAAESELAFPSFLLQCFLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LAKLAWELGRRHQSTLQEDQFPSADVRTWAMAKGLVQHPPRAAESELAFPSFLLQCFLGA
670 680 690 700 710 720
720 730 740 750 760 770
pF1KE3 LWLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPPARCLGALLGPSAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LWLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPPARCLGALLGPSAA
730 740 750 760 770 780
780 790 800 810 820 830
pF1KE3 ASVDRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAGIWQHVVQELPGRLSFLGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ASVDRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAGIWQHVVQELPGRLSFLGTR
790 800 810 820 830 840
840 850 860 870 880 890
pF1KE3 LTPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTRFRAALSDTVALWESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LTPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTRFRAALSDTVALWESL
850 860 870 880 890 900
900 910 920 930 940 950
pF1KE3 RQHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKK
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QQHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKK
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KE3 LEFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LEFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLET
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KE3 LNLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LNLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDV
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KE3 QYNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QYNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
1090 1100 1110 1120 1130
>>CCDS66943.1 CIITA gene_id:4261|Hs108|chr16 (546 aa)
initn: 2670 init1: 1547 opt: 1547 Z-score: 1141.3 bits: 222.0 E(32554): 3e-57
Smith-Waterman score: 2385; 48.1% identity (48.2% similar) in 1130 aa overlap (1-1130:1-546)
10 20 30 40 50 60
pF1KE3 MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCS
::::::::::::::::::::::::::::::::::::::::
CCDS66 HIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKP--------------------
130 140 150 160
190 200 210 220 230 240
pF1KE3 TLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSSSSLSCLNLPEGPIQFVPTISTLPHGL
.::::::::::::::::::::::::::::::
CCDS66 -----------------------------VPFSSSSLSCLNLPEGPIQFVPTISTLPHGL
170 180 190
250 260 270 280 290 300
pF1KE3 WQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTSPDRPGSTSPFAPSATDLPSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 WQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTSPDRPGSTSPFAPSATDLPSM
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE3 PEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWPEPVEQFYRSLQDTYGAEPAGPDGIL
:::::::::::::::::::::::::::::::::::
CCDS66 PEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWP-------------------------
260 270 280
370 380 390 400 410 420
pF1KE3 VEVDLVQARLERSSSKSLERELATPDWAERQLAQGGLAEVLLAAKEHRRPRETRVIAVLG
:::
CCDS66 -----------------------------------GLA----------------------
430 440 450 460 470 480
pF1KE3 KAGQGKSYWAGAVSRAWACGRLPQYDFVFSVPCHCLNRPGDAYGLQDLLFSLGPQPLVAA
:
CCDS66 --------W---------------------------------------------------
290
490 500 510 520 530 540
pF1KE3 DEVFSHILKRPDRVLLILDGFEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKKLLRG
CCDS66 ------------------------------------------------------------
550 560 570 580 590 600
pF1KE3 CTLLLTARPRGRLVQSLSKADALFELSGFSMEQAQAYVMRYFESSGMTEHQDRALTLLRD
CCDS66 ------------------------------------------------------------
610 620 630 640 650 660
pF1KE3 RPLLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALDSPPGALAEL
::
CCDS66 ---------SP-------------------------------------------------
670 680 690 700 710 720
pF1KE3 AKLAWELGRRHQSTLQEDQFPSADVRTWAMAKGLVQHPPRAAESELAFPSFLLQCFLGAL
CCDS66 ------------------------------------------------------------
730 740 750 760 770 780
pF1KE3 WLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPPARCLGALLGPSAAA
::: : ::
CCDS66 ------------------------------------------------CLG--LRPS---
790 800 810 820 830 840
pF1KE3 SVDRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAGIWQHVVQELPGRLSFLGTRL
::
CCDS66 -----------------------------LH-----------------------------
300
850 860 870 880 890 900
pF1KE3 TPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTRFRAALSDTVALWESLR
::::::::::::::.
CCDS66 ---------------------------------------------RAALSDTVALWESLQ
310
910 920 930 940 950 960
pF1KE3 QHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKL
320 330 340 350 360 370
970 980 990 1000 1010 1020
pF1KE3 EFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLETL
380 390 400 410 420 430
1030 1040 1050 1060 1070 1080
pF1KE3 NLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQ
440 450 460 470 480 490
1090 1100 1110 1120 1130
pF1KE3 YNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
500 510 520 530 540
1130 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:07:47 2016 done: Sun Nov 6 14:07:48 2016
Total Scan time: 5.860 Total Display time: 0.150
Function used was FASTA [36.3.4 Apr, 2011]