Result of FASTA (omim) for
pF1KE3504
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3504, 863 aa
1>>>pF1KE3504 863 - 863 aa - 863 aa
Library: /omim/omim.rfq.tfa
65951994 residues in 93482 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7055+/-0.000348; mu= 19.2791+/- 0.022
mean_var=86.7005+/-17.673, 0's: 0 Z-trim(114.6): 149 B-trim: 487 in 1/50
Lambda= 0.137741
statistics sampled from 25512 (25696) to 25512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.275), width: 16
Scan time: 5.810
The best scores are: opt bits E(93482)
NP_003931 (OMIM: 603591) ubiquitin carboxyl-termin ( 863) 5891 1181.4 0
XP_016862914 (OMIM: 603591) ubiquitin carboxyl-ter ( 833) 5497 1103.0 0
XP_016862915 (OMIM: 603591) ubiquitin carboxyl-ter ( 821) 5206 1045.2 0
XP_016862916 (OMIM: 603591) ubiquitin carboxyl-ter ( 711) 4803 965.1 0
XP_011511571 (OMIM: 603591) ubiquitin carboxyl-ter ( 854) 4373 879.7 0
NP_001092006 (OMIM: 601447) ubiquitin carboxyl-ter ( 858) 3301 666.7 1.4e-190
NP_003472 (OMIM: 601447) ubiquitin carboxyl-termin ( 835) 2713 549.8 2.1e-155
NP_001332954 (OMIM: 618439) ubiquitin carboxyl-ter ( 755) 181 46.6 0.00056
NP_001332953 (OMIM: 618439) ubiquitin carboxyl-ter ( 756) 179 46.2 0.00074
NP_001273006 (OMIM: 616378) UBX domain-containing ( 297) 159 42.0 0.0056
XP_016873363 (OMIM: 616378) UBX domain-containing ( 297) 159 42.0 0.0056
NP_001332959 (OMIM: 618439) ubiquitin carboxyl-ter ( 437) 161 42.5 0.0057
XP_016866875 (OMIM: 618439) ubiquitin carboxyl-ter ( 440) 161 42.5 0.0057
XP_016866874 (OMIM: 618439) ubiquitin carboxyl-ter ( 440) 161 42.5 0.0057
XP_005274090 (OMIM: 616378) UBX domain-containing ( 312) 159 42.0 0.0058
NP_056937 (OMIM: 616378) UBX domain-containing pro ( 312) 159 42.0 0.0058
NP_001332952 (OMIM: 618439) ubiquitin carboxyl-ter ( 813) 163 43.1 0.0071
NP_001332955 (OMIM: 618439) ubiquitin carboxyl-ter ( 721) 161 42.6 0.0085
NP_001073950 (OMIM: 618439) ubiquitin carboxyl-ter ( 814) 161 42.7 0.0093
NP_001332950 (OMIM: 618439) ubiquitin carboxyl-ter ( 814) 161 42.7 0.0093
NP_001332951 (OMIM: 618439) ubiquitin carboxyl-ter ( 814) 161 42.7 0.0093
XP_005267227 (OMIM: 618439) ubiquitin carboxyl-ter ( 814) 161 42.7 0.0093
>>NP_003931 (OMIM: 603591) ubiquitin carboxyl-terminal h (863 aa)
initn: 5891 init1: 5891 opt: 5891 Z-score: 6324.7 bits: 1181.4 E(93482): 0
Smith-Waterman score: 5891; 100.0% identity (100.0% similar) in 863 aa overlap (1-863:1-863)
10 20 30 40 50 60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE3 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
790 800 810 820 830 840
850 860
pF1KE3 KVCASERPPKDLGYMYFYRRIPS
:::::::::::::::::::::::
NP_003 KVCASERPPKDLGYMYFYRRIPS
850 860
>>XP_016862914 (OMIM: 603591) ubiquitin carboxyl-termina (833 aa)
initn: 5497 init1: 5497 opt: 5497 Z-score: 5901.7 bits: 1103.0 E(93482): 0
Smith-Waterman score: 5497; 100.0% identity (100.0% similar) in 807 aa overlap (57-863:27-833)
30 40 50 60 70 80
pF1KE3 LLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQ
::::::::::::::::::::::::::::::
XP_016 MKYKSSLFRTARCRSFASSAGQSAGRNSEGGLYVCMNTFLAFGREHVERHFRKTGQ
10 20 30 40 50
90 100 110 120 130 140
pF1KE3 SVYMHLKRHVREKVRGASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPDHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVYMHLKRHVREKVRGASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPDHY
60 70 80 90 100 110
150 160 170 180 190 200
pF1KE3 EIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLTQLDNGVRIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLTQLDNGVRIPP
120 130 140 150 160 170
210 220 230 240 250 260
pF1KE3 SGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGTITPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGTITPD
180 190 200 210 220 230
270 280 290 300 310 320
pF1KE3 GADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDNDIKLRVSEWEVIQESGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDNDIKLRVSEWEVIQESGTK
240 250 260 270 280 290
330 340 350 360 370 380
pF1KE3 LKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQ
300 310 320 330 340 350
390 400 410 420 430 440
pF1KE3 MTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQ
360 370 380 390 400 410
450 460 470 480 490 500
pF1KE3 DAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAME
420 430 440 450 460 470
510 520 530 540 550 560
pF1KE3 AATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFSEPENVDDFWSSALQAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFSEPENVDDFWSSALQAKS
480 490 500 510 520 530
570 580 590 600 610 620
pF1KE3 AGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEEL
540 550 560 570 580 590
630 640 650 660 670 680
pF1KE3 PDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVA
600 610 620 630 640 650
690 700 710 720 730 740
pF1KE3 FNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQA
660 670 680 690 700 710
750 760 770 780 790 800
pF1KE3 IQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPRVKDGSGTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPRVKDGSGTY
720 730 740 750 760 770
810 820 830 840 850 860
pF1KE3 ELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS
780 790 800 810 820 830
>>XP_016862915 (OMIM: 603591) ubiquitin carboxyl-termina (821 aa)
initn: 5206 init1: 5206 opt: 5206 Z-score: 5589.3 bits: 1045.2 E(93482): 0
Smith-Waterman score: 5506; 95.1% identity (95.1% similar) in 863 aa overlap (1-863:1-821)
10 20 30 40 50 60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSP----
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
::::::::::::::::::::::
XP_016 --------------------------------------KVRGASGGALPKRRNSKIFLDL
60 70
130 140 150 160 170 180
pF1KE3 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
80 90 100 110 120 130
190 200 210 220 230 240
pF1KE3 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE3 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE3 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE3 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
320 330 340 350 360 370
430 440 450 460 470 480
pF1KE3 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
380 390 400 410 420 430
490 500 510 520 530 540
pF1KE3 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
440 450 460 470 480 490
550 560 570 580 590 600
pF1KE3 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
500 510 520 530 540 550
610 620 630 640 650 660
pF1KE3 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
560 570 580 590 600 610
670 680 690 700 710 720
pF1KE3 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
620 630 640 650 660 670
730 740 750 760 770 780
pF1KE3 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
680 690 700 710 720 730
790 800 810 820 830 840
pF1KE3 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
740 750 760 770 780 790
850 860
pF1KE3 KVCASERPPKDLGYMYFYRRIPS
:::::::::::::::::::::::
XP_016 KVCASERPPKDLGYMYFYRRIPS
800 810 820
>>XP_016862916 (OMIM: 603591) ubiquitin carboxyl-termina (711 aa)
initn: 4803 init1: 4803 opt: 4803 Z-score: 5157.4 bits: 965.1 E(93482): 0
Smith-Waterman score: 4803; 100.0% identity (100.0% similar) in 704 aa overlap (160-863:8-711)
130 140 150 160 170 180
pF1KE3 DYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVS
::::::::::::::::::::::::::::::
XP_016 MRMALCQVTIACDAVLSSKSPYRKQDPDTWENELPVS
10 20 30
190 200 210 220 230 240
pF1KE3 KYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHY
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE3 RDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHGTENGLQDND
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE3 IKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLP
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE3 RIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMF
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE3 KAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKV
280 290 300 310 320 330
490 500 510 520 530 540
pF1KE3 RYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFS
340 350 360 370 380 390
550 560 570 580 590 600
pF1KE3 EPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLL
400 410 420 430 440 450
610 620 630 640 650 660
pF1KE3 DINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLE
460 470 480 490 500 510
670 680 690 700 710 720
pF1KE3 ACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPP
520 530 540 550 560 570
730 740 750 760 770 780
pF1KE3 EEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANII
580 590 600 610 620 630
790 800 810 820 830 840
pF1KE3 SEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPP
640 650 660 670 680 690
850 860
pF1KE3 KDLGYMYFYRRIPS
::::::::::::::
XP_016 KDLGYMYFYRRIPS
700 710
>>XP_011511571 (OMIM: 603591) ubiquitin carboxyl-termina (854 aa)
initn: 4373 init1: 4373 opt: 4373 Z-score: 4694.4 bits: 879.7 E(93482): 0
Smith-Waterman score: 5793; 98.8% identity (98.8% similar) in 863 aa overlap (1-863:1-854)
10 20 30 40 50 60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQ
:::::::::::::::::::::::::::::::::::::::: ::::::::::
XP_011 VSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSK---------ASDIDESSVMQ
610 620 630 640 650
670 680 690 700 710 720
pF1KE3 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFG
660 670 680 690 700 710
730 740 750 760 770 780
pF1KE3 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEM
720 730 740 750 760 770
790 800 810 820 830 840
pF1KE3 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDH
780 790 800 810 820 830
850 860
pF1KE3 KVCASERPPKDLGYMYFYRRIPS
:::::::::::::::::::::::
XP_011 KVCASERPPKDLGYMYFYRRIPS
840 850
>>NP_001092006 (OMIM: 601447) ubiquitin carboxyl-termina (858 aa)
initn: 3463 init1: 1583 opt: 3301 Z-score: 3543.1 bits: 666.7 E(93482): 1.4e-190
Smith-Waterman score: 3598; 60.6% identity (84.0% similar) in 862 aa overlap (26-863:7-858)
10 20 30 40 50 60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
: :. .::::::..::::.:.:::::.:.:.:::
NP_001 MAELSEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEG
10 20 30 40
70 80 90 100 110
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRG-ASG-GALPKRRNSKIFL
:::.::::::.::...::::: :::: ::.::.: : : . :.: : :... ... .
NP_001 GLYICMNTFLGFGKQYVERHFNKTGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 DLDTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALV----TIACDAVLSSKSPY
.. ::. . .: ....:.::.::. ::: .. :: .: : : .:.::. :
NP_001 GVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSAS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 RKQDPDTWENEL-PVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGK
:::. ..:..:. :::.: .: :::: .:::: ::::..::.::::::::::::.:::.
NP_001 RKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGR
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 WFFDSSGGNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGI
.::.::::.::.::::. ::::::::::::::::::::..:.. :::: ::.::.::::
NP_001 RYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGI
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE3 DMLHMHGTENGLQDNDIKL--RVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVM
:::.:. :.. . . .: . :..:::.:::::. :::..::::::..::::::::.::.
NP_001 DMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVV
290 300 310 320 330 340
360 370 380 390 400 410
pF1KE3 QAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQ
:..::::.::: :: .: .::. .: ::::::.::..:::::::::.:::: .: :.
NP_001 QVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER
350 360 370 380 390 400
420 430 440 450 460 470
pF1KE3 VMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSD
: :.: :.::.::::::...:.:::::.:::::::::::::.:.:::: .::::..
NP_001 V--PEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNE
410 420 430 440 450
480 490 500 510 520 530
pF1KE3 VFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPL
::::::::.:.: :.::.::.::::.::::: :.:: ::.::. :: .:.:: .. :
NP_001 VFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMAL
460 470 480 490 500 510
540 550 560 570 580 590
pF1KE3 PELVRAKIPFSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFG
::::::..:::.::.:.. ::.::::::.::::::..:::.::::::.:::.::::::::
NP_001 PELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFG
520 530 540 550 560 570
600 610 620 630 640
pF1KE3 LDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLM---NQLI
:::::::.::::.::. :::..::. ::::::::::::.::.: ::. : : :.
NP_001 LDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGFYGNEDE
580 590 600 610 620 630
650 660 670 680 690
pF1KE3 D---------PSD--IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEP
: :.. .::: ..::.:::::..:::::::.::: :::.:.::.. ::..:
NP_001 DSFCSPHFSSPTSPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP
640 650 660 670 680 690
700 710 720 730 740 750
pF1KE3 DFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNL
:::.:: .:: .: .:..:.. . :::. :. :.::::.:.::..:::::::.:
NP_001 DFANPLILPGSSGPGSTSAAA-------DPPPEDCVTTIVSMGFSRDQALKALRATNNSL
700 710 720 730 740 750
760 770 780 790 800 810
pF1KE3 ERALDWIFSHPEFEEDSDFVIEM-ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMG
:::.:::::: . . :.. .... :. . :. :::. : ::.:.:: : :.:::::::::
NP_001 ERAVDWIFSHID-DLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMG
760 770 780 790 800 810
820 830 840 850 860
pF1KE3 TSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS
:::: :::.::::::::::::::.::::::.:::::::.:::.:. :
NP_001 TSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS
820 830 840 850
>>NP_003472 (OMIM: 601447) ubiquitin carboxyl-terminal h (835 aa)
initn: 3402 init1: 1580 opt: 2713 Z-score: 2911.8 bits: 549.8 E(93482): 2.1e-155
Smith-Waterman score: 3606; 61.1% identity (84.7% similar) in 848 aa overlap (26-863:7-835)
10 20 30 40 50 60
pF1KE3 MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEG
: :. .::::::..::::.:.:::::.:.:.:::
NP_003 MAELSEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEG
10 20 30 40
70 80 90 100 110
pF1KE3 GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRG-ASG-GALPKRRNSKIFL
:::.::::::.::...::::: :::: ::.::.: : : . :.: : :... ... .
NP_003 GLYICMNTFLGFGKQYVERHFNKTGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 DLDTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALV----TIACDAVLSSKSPY
.. ::. . .: ....:.::.::. ::: .. :: .: : : .:.::. :
NP_003 GVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSAS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 RKQDPDTWENEL-PVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGK
:::. ..:..:. :::.: .: :::: .:::: ::::..::.::::::::::::.:::.
NP_003 RKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGR
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 WFFDSSGGNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGI
.::.::::.::.::::. ::::::::::::::::::::..:.. :::: ::.::.::::
NP_003 RYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGI
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE3 DMLHMHGTENGLQDNDIKL--RVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVM
:::.:. :.. . . .: . :..:::.:::::. :::..::::::..::::::::.::.
NP_003 DMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVV
290 300 310 320 330 340
360 370 380 390 400 410
pF1KE3 QAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQ
:..::::.::: :: .: .::. .: ::::::.::..:::::::::.:::: .: :.
NP_003 QVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER
350 360 370 380 390 400
420 430 440 450 460 470
pF1KE3 VMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSD
: :.: :.::.::::::...:.:::::.:::::::::::::.:.:::: .::::..
NP_003 V--PEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNE
410 420 430 440 450
480 490 500 510 520 530
pF1KE3 VFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPL
::::::::.:.: :.::.::.::::.::::: :.:: ::.::. :: .:.:: .. :
NP_003 VFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMAL
460 470 480 490 500 510
540 550 560 570 580 590
pF1KE3 PELVRAKIPFSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFG
::::::..:::.::.:.. ::.::::::.::::::..:::.::::::.:::.::::::::
NP_003 PELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFG
520 530 540 550 560 570
600 610 620 630 640 650
pF1KE3 LDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPS
:::::::.::::.::. :::..::. ::::::::::::.::.: ::. : ..
NP_003 LDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPML-------
580 590 600 610 620 630
660 670 680 690 700 710
pF1KE3 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGA
::: ..::.:::::..:::::::.::: :::.:.::.. ::..::::.:: .:: .:
NP_003 --DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGP
640 650 660 670 680 690
720 730 740 750 760 770
pF1KE3 ASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFE
.:..:.. . :::. :. :.::::.:.::..:::::::.::::.:::::: . .
NP_003 GSTSAAA-------DPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHID-D
700 710 720 730 740
780 790 800 810 820 830
pF1KE3 EDSDFVIEM-ENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKK
:.. .... :. . :. :::. : ::.:.:: : :.::::::::::::: :::.:::::
NP_003 LDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK
750 760 770 780 790 800
840 850 860
pF1KE3 EGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS
:::::::::.::::::.:::::::.:::.:. :
NP_003 EGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS
810 820 830
>>NP_001332954 (OMIM: 618439) ubiquitin carboxyl-termina (755 aa)
initn: 165 init1: 74 opt: 181 Z-score: 193.1 bits: 46.6 E(93482): 0.00056
Smith-Waterman score: 207; 24.2% identity (57.5% similar) in 339 aa overlap (170-481:17-330)
140 150 160 170 180 190
pF1KE3 VIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVS-KYANNLTQL
:: : .: :. .. .. ..... ..
NP_001 MRVKDPTKALPEKAKRSKRPTVPHDEDSSDDIAGLTCQHVSHAISV
10 20 30 40
200 210 220 230 240
pF1KE3 DNGVR-IPPSGWK-CARCDLRENLW----LNLTDGSVLCGKWFFDSSGGNG---HALEHY
.. : : . :. :..: :.: . : ::. :: : :.. : :. :.:.:.
NP_001 NHVKRAIAENLWSVCSEC-LKERRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHF
50 60 70 80 90 100
250 260 270 280 290 300
pF1KE3 ---RDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG--TENG
: . . ..:.: .. .. .: :. : :.. .:.:. :. :...
NP_001 KSSRTEPHCIIINLSTWI-----IWCYECDEK-LSTHCNKKVLAQIVDFLQKHASKTQTS
110 120 130 140 150
310 320 330 340 350
pF1KE3 LQDNDIKL--RVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAI---FSIPE
. .:: . : . ::..: : . . . :. ::::.:....::: . ... .
NP_001 AFSRIMKLCEEKCETDEIQKGG-KCRNL---SVRGITNLGNTCFFNAVMQNLAQTYTLTD
160 170 180 190 200 210
360 370 380 390 400 410
pF1KE3 FQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKP-PVKSELIE--QVMKEE
.. . .. . :..: .:. : . :.: :. : :. . :::
NP_001 LMNEIKESSTKLKIF----PSSD--SQLDPL-----VVELSRPGPLTSALFLFLHSMKET
220 230 240 250 260
420 430 440 450 460 470
pF1KE3 HKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLV--ERNRIGS-ENPS-DV
.: . .::... . .. :.:.. .:::.::.. .:.. : :...:.. ..: :.
NP_001 EK---GPLSPKVLFNQLCQKAPRFKDFQQQDSQELLHYLLDAVRTEETKISTVKDPFIDI
270 280 290 300 310 320
480 490 500 510 520 530
pF1KE3 FRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLP
..:::.
NP_001 SLPIIEERVSKPLLWGRMNKYRSLRETDHDRYSGNVTIENIHQPRAAKKHSSSKDKSQLI
330 340 350 360 370 380
>>NP_001332953 (OMIM: 618439) ubiquitin carboxyl-termina (756 aa)
initn: 165 init1: 74 opt: 179 Z-score: 191.0 bits: 46.2 E(93482): 0.00074
Smith-Waterman score: 205; 24.3% identity (57.5% similar) in 341 aa overlap (170-481:17-331)
140 150 160 170 180 190
pF1KE3 VIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVS---KYANNLT
:: : .: :. ... :. .....
NP_001 MRVKDPTKALPEKAKRSKRPTVPHDEDS-SDDIAVGLTCQHVSHAI
10 20 30 40
200 210 220 230 240
pF1KE3 QLDNGVR-IPPSGWK-CARCDLRENLW----LNLTDGSVLCGKWFFDSSGGNG---HALE
.... : : . :. :..: :.: . : ::. :: : :.. : :. :.:.
NP_001 SVNHVKRAIAENLWSVCSEC-LKERRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLK
50 60 70 80 90 100
250 260 270 280 290 300
pF1KE3 HY---RDMGYPLAVKLGTITPDGADVYSFQEEEPVLDPHLAKHLAHFGIDMLHMHG--TE
:. : . . ..:.: .. .. .: :. : :.. .:.:. :. :.
NP_001 HFKSSRTEPHCIIINLSTWI-----IWCYECDEK-LSTHCNKKVLAQIVDFLQKHASKTQ
110 120 130 140 150
310 320 330 340 350
pF1KE3 NGLQDNDIKL--RVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAI---FSI
.. . .:: . : . ::..: : . . . :. ::::.:....::: . ...
NP_001 TSAFSRIMKLCEEKCETDEIQKGG-KCRNL---SVRGITNLGNTCFFNAVMQNLAQTYTL
160 170 180 190 200 210
360 370 380 390 400 410
pF1KE3 PEFQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKP-PVKSELIE--QVMK
... . .. . :..: .:. : . :.: :. : :. . ::
NP_001 TDLMNEIKESSTKLKIF----PSSD--SQLDPL-----VVELSRPGPLTSALFLFLHSMK
220 230 240 250 260
420 430 440 450 460 470
pF1KE3 EEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLV--ERNRIGS-ENPS-
: .: . .::... . .. :.:.. .:::.::.. .:.. : :...:.. ..:
NP_001 ETEK---GPLSPKVLFNQLCQKAPRFKDFQQQDSQELLHYLLDAVRTEETKISTVKDPFI
270 280 290 300 310 320
480 490 500 510 520 530
pF1KE3 DVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRP
:. ..:::.
NP_001 DISLPIIEERVSKPLLWGRMNKYRSLRETDHDRYSGNVTIENIHQPRAAKKHSSSKDKSQ
330 340 350 360 370 380
>>NP_001273006 (OMIM: 616378) UBX domain-containing prot (297 aa)
initn: 180 init1: 153 opt: 159 Z-score: 175.2 bits: 42.0 E(93482): 0.0056
Smith-Waterman score: 159; 43.1% identity (72.5% similar) in 51 aa overlap (656-706:5-55)
630 640 650 660 670 680
pF1KE3 LPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEV
... .: ::::: .::. .:::.: :.
NP_001 MAELTALESLIEMGFPRGRAEKALALTGNQGIEA
10 20 30
690 700 710 720 730 740
pF1KE3 AFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQ
:..:.. : ..:: ::: :
NP_001 AMDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQ
40 50 60 70 80 90
863 residues in 1 query sequences
65951994 residues in 93482 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Jun 20 10:38:59 2019 done: Thu Jun 20 10:39:00 2019
Total Scan time: 5.810 Total Display time: 0.170
Function used was FASTA [36.3.4 Apr, 2011]