FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3815, 485 aa 1>>>pF1KE3815 485 - 485 aa - 485 aa Library: human.CCDS.faa 18921897 residues in 33420 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.9080+/-0.00103; mu= -2.9774+/- 0.062 mean_var=507.0629+/-103.933, 0's: 0 Z-trim(117.7): 56 B-trim: 175 in 1/52 Lambda= 0.056957 statistics sampled from 18637 (18693) to 18637 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.559), width: 16 Scan time: 1.800 The best scores are: opt bits E(33420) CCDS77990.1 DUX4 gene_id:100288687|Hs109|chr4 ( 424) 3014 261.8 1.1e-69 >>CCDS77990.1 DUX4 gene_id:100288687|Hs109|chr4 (424 aa) initn: 3014 init1: 3014 opt: 3014 Z-score: 1365.0 bits: 261.8 E(33420): 1.1e-69 Smith-Waterman score: 3014; 100.0% identity (100.0% similar) in 424 aa overlap (62-485:1-424) 40 50 60 70 80 90 pF1KE3 AVHSPAEVHGSPPASLCPRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWTPSQ :::::::::::::::::::::::::::::: CCDS77 MALPTPSDSTLPAEARGRGRRRRLVWTPSQ 10 20 30 100 110 120 130 140 150 pF1KE3 SEALRACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 SEALRACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRG 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE3 PPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQNRRARHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQNRRARHP 100 110 120 130 140 150 220 230 240 250 260 270 pF1KE3 GQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTGLPAPHVPCAPGALPQGAFVSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 GQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTGLPAPHVPCAPGALPQGAFVSQ 160 170 180 190 200 210 280 290 300 310 320 330 pF1KE3 AARAAPALQPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 AARAAPALQPSQAAPAEGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSREDR 220 230 240 250 260 270 340 350 360 370 380 390 pF1KE3 DPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 DPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAA 280 290 300 310 320 330 400 410 420 430 440 450 pF1KE3 PPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEFLQQAQPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PPPQPAPPDASASARQGQMQGIPAPSQALQEPAPWSALPCGLLLDELLASPEFLQQAQPL 340 350 360 370 380 390 460 470 480 pF1KE3 LETEAPGELEASEEAASLEAPLSEEEYRALLEEL :::::::::::::::::::::::::::::::::: CCDS77 LETEAPGELEASEEAASLEAPLSEEEYRALLEEL 400 410 420 485 residues in 1 query sequences 18921897 residues in 33420 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Jul 24 16:39:25 2018 done: Tue Jul 24 16:39:25 2018 Total Scan time: 1.800 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]