FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3971, 454 aa
  1>>>pF1KE3971     454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0684+/-0.000988; mu= 5.7081+/- 0.059
 mean_var=200.5972+/-41.374, 0's: 0 Z-trim(111.8): 86  B-trim: 332 in 2/50
 Lambda= 0.090555
 statistics sampled from 12748 (12834) to 12748 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.384), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(33420)
CCDS34523.1 GOPC gene_id:57120|Hs109|chr6          ( 454) 2996 404.1 1.6e-112
CCDS5117.1 GOPC gene_id:57120|Hs109|chr6           ( 462) 2970 400.7 1.7e-111


>>CCDS34523.1 GOPC gene_id:57120|Hs109|chr6               (454 aa)
 initn: 2996 init1: 2996 opt: 2996  Z-score: 2133.9  bits: 404.1 E(33420): 1.6e-112
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KE3 MSAGGPCPAAAGGGPGGASCSVGAPGGVSMFRWLEVLEKEFDKAFVDVDLLLGEIDPDQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSAGGPCPAAAGGGPGGASCSVGAPGGVSMFRWLEVLEKEFDKAFVDVDLLLGEIDPDQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DITYEGRQKMTSLSSCFAQLCHKAQSVSQINHKLEAQLVDLKSELTETQAEKVVLEKEVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DITYEGRQKMTSLSSCFAQLCHKAQSVSQINHKLEAQLVDLKSELTETQAEKVVLEKEVH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DQLLQLHSIQLQLHAKTGQSADSGTIKAKLERELEANKKEKMKEAQLEAEVKLLRKENEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DQLLQLHSIQLQLHAKTGQSADSGTIKAKLERELEANKKEKMKEAQLEAEVKLLRKENEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LRRHIAVLQAEVYGARLAAKYLDKELAGRVQQIQLLGRDMKGPAHDKLWNQLEAEIHLHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LRRHIAVLQAEVYGARLAAKYLDKELAGRVQQIQLLGRDMKGPAHDKLWNQLEAEIHLHR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 HKTVIRACRGRNDLKRPMQAPPGHDQDSLKKSQGVGPIRKVLLLKEDHEGLGISITGGKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HKTVIRACRGRNDLKRPMQAPPGHDQDSLKKSQGVGPIRKVLLLKEDHEGLGISITGGKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 YVAPEVDSDDENVEYEDESGHRYRLYLDELEGGGNPGASCKDTSGEIKVLQGFNKKAVTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YVAPEVDSDDENVEYEDESGHRYRLYLDELEGGGNPGASCKDTSGEIKVLQGFNKKAVTD
              370       380       390       400       410       420

              430       440       450    
pF1KE3 THENGDLGTASETPLDDGASKLDDLHTLYHKKSY
       ::::::::::::::::::::::::::::::::::
CCDS34 THENGDLGTASETPLDDGASKLDDLHTLYHKKSY
              430       440       450    

>>CCDS5117.1 GOPC gene_id:57120|Hs109|chr6                (462 aa)
 initn: 2023 init1: 2023 opt: 2970  Z-score: 2115.5  bits: 400.7 E(33420): 1.7e-111
Smith-Waterman score: 2970; 98.3% identity (98.3% similar) in 462 aa overlap (1-454:1-462)

               10        20        30        40        50        60
pF1KE3 MSAGGPCPAAAGGGPGGASCSVGAPGGVSMFRWLEVLEKEFDKAFVDVDLLLGEIDPDQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MSAGGPCPAAAGGGPGGASCSVGAPGGVSMFRWLEVLEKEFDKAFVDVDLLLGEIDPDQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DITYEGRQKMTSLSSCFAQLCHKAQSVSQINHKLEAQLVDLKSELTETQAEKVVLEKEVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 DITYEGRQKMTSLSSCFAQLCHKAQSVSQINHKLEAQLVDLKSELTETQAEKVVLEKEVH
               70        80        90       100       110       120

              130       140       150               160       170  
pF1KE3 DQLLQLHSIQLQLHAKTGQSADSGTIKAKL--------ERELEANKKEKMKEAQLEAEVK
       ::::::::::::::::::::::::::::::        ::::::::::::::::::::::
CCDS51 DQLLQLHSIQLQLHAKTGQSADSGTIKAKLSGPSVEELERELEANKKEKMKEAQLEAEVK
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KE3 LLRKENEALRRHIAVLQAEVYGARLAAKYLDKELAGRVQQIQLLGRDMKGPAHDKLWNQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LLRKENEALRRHIAVLQAEVYGARLAAKYLDKELAGRVQQIQLLGRDMKGPAHDKLWNQL
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KE3 EAEIHLHRHKTVIRACRGRNDLKRPMQAPPGHDQDSLKKSQGVGPIRKVLLLKEDHEGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 EAEIHLHRHKTVIRACRGRNDLKRPMQAPPGHDQDSLKKSQGVGPIRKVLLLKEDHEGLG
              250       260       270       280       290       300

            300       310       320       330       340       350  
pF1KE3 ISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 ISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR
              310       320       330       340       350       360

            360       370       380       390       400       410  
pF1KE3 GEIEFEVVYVAPEVDSDDENVEYEDESGHRYRLYLDELEGGGNPGASCKDTSGEIKVLQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 GEIEFEVVYVAPEVDSDDENVEYEDESGHRYRLYLDELEGGGNPGASCKDTSGEIKVLQG
              370       380       390       400       410       420

            420       430       440       450    
pF1KE3 FNKKAVTDTHENGDLGTASETPLDDGASKLDDLHTLYHKKSY
       ::::::::::::::::::::::::::::::::::::::::::
CCDS51 FNKKAVTDTHENGDLGTASETPLDDGASKLDDLHTLYHKKSY
              430       440       450       460  




454 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:28:54 2019 done: Thu Oct 24 21:28:54 2019
 Total Scan time:  1.660 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]