Result of FASTA (omim) for
pF1KE4367
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4367, 386 aa
1>>>pF1KE4367 386 - 386 aa - 386 aa
Library: /omim/omim.rfq.tfa
64369986 residues in 92320 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8526+/-0.000331; mu= 16.0017+/- 0.021
mean_var=118.7797+/-23.618, 0's: 0 Z-trim(118.3): 61 B-trim: 62 in 1/52
Lambda= 0.117680
statistics sampled from 32318 (32380) to 32318 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.351), width: 16
Scan time: 5.050
The best scores are: opt bits E(92320)
NP_003831 (OMIM: 603614) tumor necrosis factor rec ( 386) 2571 447.4 2.9e-125
NP_003833 (OMIM: 275355,603612) tumor necrosis fac ( 440) 1090 196.0 1.6e-49
NP_003832 (OMIM: 603613) tumor necrosis factor rec ( 259) 819 149.8 7.6e-36
NP_671716 (OMIM: 275355,603612) tumor necrosis fac ( 411) 664 123.7 8.8e-28
NP_003835 (OMIM: 603611) tumor necrosis factor rec ( 468) 632 118.3 4.1e-26
NP_001307548 (OMIM: 134637,601859) tumor necrosis ( 197) 226 49.0 1.3e-05
NP_690611 (OMIM: 134637,601859) tumor necrosis fac ( 220) 226 49.0 1.4e-05
NP_000034 (OMIM: 134637,601859) tumor necrosis fac ( 335) 226 49.2 1.8e-05
XP_011538069 (OMIM: 134637,601859) tumor necrosis ( 350) 226 49.2 1.9e-05
XP_011538068 (OMIM: 134637,601859) tumor necrosis ( 362) 226 49.2 1.9e-05
XP_006717882 (OMIM: 134637,601859) tumor necrosis ( 362) 226 49.2 1.9e-05
XP_011538066 (OMIM: 134637,601859) tumor necrosis ( 389) 226 49.3 2e-05
NP_001284534 (OMIM: 602746) tumor necrosis factor ( 184) 218 47.6 3.1e-05
XP_006711082 (OMIM: 602746) tumor necrosis factor ( 197) 218 47.6 3.3e-05
NP_003811 (OMIM: 602746) tumor necrosis factor rec ( 283) 218 47.8 4.2e-05
NP_690610 (OMIM: 134637,601859) tumor necrosis fac ( 314) 217 47.6 5.1e-05
NP_002537 (OMIM: 239000,602643) tumor necrosis fac ( 401) 218 47.9 5.4e-05
XP_011538067 (OMIM: 134637,601859) tumor necrosis ( 368) 217 47.7 5.7e-05
NP_001056 (OMIM: 142680,191190,614810) tumor necro ( 455) 207 46.1 0.00021
NP_002498 (OMIM: 162010) tumor necrosis factor rec ( 427) 197 44.4 0.00066
XP_016857721 (OMIM: 600315,615593) tumor necrosis ( 277) 176 40.6 0.0058
NP_003318 (OMIM: 600315,615593) tumor necrosis fac ( 277) 176 40.6 0.0058
XP_016857720 (OMIM: 600315,615593) tumor necrosis ( 303) 176 40.7 0.0062
XP_011540377 (OMIM: 600315,615593) tumor necrosis ( 303) 176 40.7 0.0062
>>NP_003831 (OMIM: 603614) tumor necrosis factor recepto (386 aa)
initn: 2571 init1: 2571 opt: 2571 Z-score: 2370.5 bits: 447.4 E(92320): 2.9e-125
Smith-Waterman score: 2571; 99.7% identity (99.7% similar) in 386 aa overlap (1-386:1-386)
10 20 30 40 50 60
pF1KE4 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 QDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 KNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 KGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 AELTGVTVESPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAKE
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AELTGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAKE
310 320 330 340 350 360
370 380
pF1KE4 TIQDQLVGSEKLFYEEDEAGSATSCL
::::::::::::::::::::::::::
NP_003 TIQDQLVGSEKLFYEEDEAGSATSCL
370 380
>>NP_003833 (OMIM: 275355,603612) tumor necrosis factor (440 aa)
initn: 1035 init1: 582 opt: 1090 Z-score: 1010.9 bits: 196.0 E(92320): 1.6e-49
Smith-Waterman score: 1090; 53.0% identity (71.6% similar) in 345 aa overlap (5-342:5-336)
10 20 30 40 50
pF1KE4 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVA-VLLPVRVDSATIP
::..:.::.:: . :: : : :.:: :.. : .:..:: ::: : ..:: :
NP_003 MEQRGQNAPAASGARKRHGPGPREARGARP---GPRVPKTLVLVVAAVLLLVSAESALIT
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 RQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCT
.:: .::: .::::.: : .: :: : : :: : : : ::. :.: :: ::
NP_003 QQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 VCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIK
: ::... : :::::.::::::.:.:....:::::: ::::::::::::..::: :::.
NP_003 RCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 C-KNESAASSTGKTPAAEETVTTILGMLASPYHYL-IIIVVLVIILAVVVVGFSCR----
: ..::... .:..::.:::::. : ::: ::: : : ....:. : :.
NP_003 CVHKESGTKHSGEVPAVEETVTSSPGTPASPCSLSGIIIGVTVAAVVLIVAVFVCKSLLW
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 KKFISYLKGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQ
:: . ::::::::::: :::: : :. ::::::. :: .: :::::: ::
NP_003 KKVLPYLKGICSGGGGDPERVDR--------SSQRPGAEDNVLNEIVS--ILQPTQVPEQ
240 250 260 270 280
300 310 320 330 340 350
pF1KE4 EIQGQELAELTGVTVESPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATL
:.. :: :: :::.. :: : ..::: :::: ::::::::.:..: ..
NP_003 EMEVQEPAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTETLRQCFDDFAD
290 300 310 320 330 340
360 370 380
pF1KE4 EEGHAKETIQDQLVGSEKLFYEEDEAGSATSCL
NP_003 LVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKTGRDASVHTLLDALE
350 360 370 380 390 400
>>NP_003832 (OMIM: 603613) tumor necrosis factor recepto (259 aa)
initn: 913 init1: 680 opt: 819 Z-score: 765.1 bits: 149.8 E(92320): 7.6e-36
Smith-Waterman score: 819; 71.2% identity (85.3% similar) in 170 aa overlap (35-204:5-173)
10 20 30 40 50 60
pF1KE4 GQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPRQDEV
:: ::::: :::::::: . ::: ::.::
NP_003 MARIPKTLKFVVVIVAVLLPVLAYSATTARQEEV
10 20 30
70 80 90 100 110 120
pF1KE4 PQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG
:::::::::::.:.: :::::::::::.:::::::::::::: :::: :::. ::::::
NP_003 PQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCKSD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE4 QTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNES
: .::::: ::::::::..:.:...::::::: : . :: : :.::::: .::.: .:
NP_003 QKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKC-SRCPSGEVQVSNCTSWDDIQCVEEF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 AASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGIC
.:..: .:::::::..: :
NP_003 GANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETM
160 170 180 190 200 210
>>NP_671716 (OMIM: 275355,603612) tumor necrosis factor (411 aa)
initn: 1028 init1: 575 opt: 664 Z-score: 620.4 bits: 123.7 E(92320): 8.8e-28
Smith-Waterman score: 980; 49.6% identity (67.3% similar) in 339 aa overlap (5-342:5-307)
10 20 30 40 50
pF1KE4 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVA-VLLPVRVDSATIP
::..:.::.:: . :: : : :.:: :.. : .:..:: ::: : ..:: :
NP_671 MEQRGQNAPAASGARKRHGPGPREARGARP---GPRVPKTLVLVVAAVLLLVSAESALIT
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 RQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCT
.:: .::: .::::.: : .: :: : : :: : : : ::. :.: :: ::
NP_671 QQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 VCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIK
: ::... : :::::.::::::.:.:....:::::: ::::::::::::..::: :::.
NP_671 RCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 CKNESAASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISY
: .. .. :.: . ....:.:.:: : :: . :
NP_671 CVHKESG--------------IIIG---------VTVAAVVLIVAVFVCKSLLWKKVLPY
180 190 200 210
240 250 260 270 280 290
pF1KE4 LKGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETLSNRYLQPTQVSEQEIQGQE
:::::::::: :::: : :. ::::::. :: .: :::::: :::.. ::
NP_671 LKGICSGGGGDPERVDR--------SSQRPGAEDNVLNEIVS--ILQPTQVPEQEMEVQE
220 230 240 250 260
300 310 320 330 340 350
pF1KE4 LAELTGVTVESPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDASATLEEGHAK
:: :::.. :: : ..::: :::: ::::::::.:..: ..
NP_671 PAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTETLRQCFDDFADLVPFDS
270 280 290 300 310 320
360 370 380
pF1KE4 ETIQDQLVGSEKLFYEEDEAGSATSCL
NP_671 WEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKTGRDASVHTLLDALETLGERL
330 340 350 360 370 380
>>NP_003835 (OMIM: 603611) tumor necrosis factor recepto (468 aa)
initn: 1043 init1: 517 opt: 632 Z-score: 590.4 bits: 118.3 E(92320): 4.1e-26
Smith-Waterman score: 918; 44.2% identity (57.8% similar) in 443 aa overlap (5-384:60-466)
10 20 30
pF1KE4 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLD
:: :.: ::::: :: : : . : :
NP_003 AAATPSKVWGSSAGRIEPRGGGRGALPTSMGQHGPSAR-ARAGRAPGPRPAREASPRLRV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE4 PKILKFVVFIVAVLLPVRVDSA-TIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYT
: .:::: :.::: : .:: :: .: :... :: ..: : :: ::::::.
NP_003 HKTFKFVV--VGVLLQVVPSSAATIKLHD----QSIGTQQWEHSPLGELCPPGSHRSEHP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE4 GACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPE
:::: ::::: :: ::::: .:: ::.::: . ..: :::::.:.:::. :.:.. :: :
NP_003 GACNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAE
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE4 MCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGMLASPYHYL
::: : :::::::::..::: :::.: .. :..:.. ..
NP_003 MCRKCSRGCPRGMVKVKDCTPWSDIECVHKE--SGNGHNI------------------WV
210 220 230 240
220 230 240 250 260 270
pF1KE4 IIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCPSRVPGAED
:..:.::. : .:.: . : : :: :: :. . :: : : . : :::::
NP_003 ILVVTLVVPLLLVAVLIVC--------CCIGSGCGGDPKCMDRVCFWRLGL-LRGPGAED
250 260 270 280 290
280 290 300 310 320 330
pF1KE4 NARNETLSNRYLQPTQVSEQEIQGQELAELTGVTVESPEEPQRLLEQAEAEGCQRRRLLV
::.:: ::: : ::::....:: :.::::::.:: : : :: ::::: :::::::
NP_003 NAHNEILSNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLV
300 310 320 330 340 350
pF1KE4 PVNDAD------------------------------------------------------
:.: ::
NP_003 PANGADPTETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLM
360 370 380 390 400 410
340 350 360 370 380
pF1KE4 --------SADISTLLDASATLEEGHAKETIQDQLVGSEKLFYEEDEAGSATSCL
.:.: ::::: .:: ::.: ::: :: : :..: :: .:::.:
NP_003 KWVNKTGRNASIHTLLDALERMEERHAREKIQDLLVDSGKFIYLEDGTGSAVSLE
420 430 440 450 460
>>NP_001307548 (OMIM: 134637,601859) tumor necrosis fact (197 aa)
initn: 174 init1: 97 opt: 226 Z-score: 222.5 bits: 49.0 E(92320): 1.3e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:44-175)
40 50 60 70 80 90
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
: :.. .. .. .. :: : ....
NP_001 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
20 30 40 50 60 70
100 110 120 130 140
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
.: : :: :: .:: .. .: : .: :. . .:: :..: :.:. .
NP_001 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
80 90 100 110 120 130
150 160 170 180 190 200
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
: ... : : : : : .:..: .:: :. :::.:.. :. :
NP_001 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWG
140 150 160 170 180 190
210 220 230 240 250 260
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
NP_001 NSGNKFI
>>NP_690611 (OMIM: 134637,601859) tumor necrosis factor (220 aa)
initn: 174 init1: 97 opt: 226 Z-score: 221.9 bits: 49.0 E(92320): 1.4e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:44-175)
40 50 60 70 80 90
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
: :.. .. .. .. :: : ....
NP_690 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
20 30 40 50 60 70
100 110 120 130 140
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
.: : :: :: .:: .. .: : .: :. . .:: :..: :.:. .
NP_690 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
80 90 100 110 120 130
150 160 170 180 190 200
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
: ... : : : : : .:..: .:: :. :::.:.. :. :
NP_690 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWV
140 150 160 170 180 190
210 220 230 240 250 260
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
NP_690 KRKEVQKTCRKHRKENQGSHESPTLNPMLT
200 210 220
>>NP_000034 (OMIM: 134637,601859) tumor necrosis factor (335 aa)
initn: 175 init1: 97 opt: 226 Z-score: 219.6 bits: 49.2 E(92320): 1.8e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:44-175)
40 50 60 70 80 90
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
: :.. .. .. .. :: : ....
NP_000 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
20 30 40 50 60 70
100 110 120 130 140
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
.: : :: :: .:: .. .: : .: :. . .:: :..: :.:. .
NP_000 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
80 90 100 110 120 130
150 160 170 180 190 200
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
: ... : : : : : .:..: .:: :. :::.:.. :. :
NP_000 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWV
140 150 160 170 180 190
210 220 230 240 250 260
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
NP_000 KRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVR
200 210 220 230 240 250
>>XP_011538069 (OMIM: 134637,601859) tumor necrosis fact (350 aa)
initn: 175 init1: 97 opt: 226 Z-score: 219.4 bits: 49.2 E(92320): 1.9e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:59-190)
40 50 60 70 80 90
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
: :.. .. .. .. :: : ....
XP_011 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
30 40 50 60 70 80
100 110 120 130 140
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
.: : :: :: .:: .. .: : .: :. . .:: :..: :.:. .
XP_011 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
90 100 110 120 130 140
150 160 170 180 190 200
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
: ... : : : : : .:..: .:: :. :::.:.. :. :
XP_011 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWV
150 160 170 180 190 200
210 220 230 240 250 260
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
XP_011 KRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVR
210 220 230 240 250 260
>>XP_011538068 (OMIM: 134637,601859) tumor necrosis fact (362 aa)
initn: 175 init1: 97 opt: 226 Z-score: 219.2 bits: 49.2 E(92320): 1.9e-05
Smith-Waterman score: 226; 29.6% identity (57.8% similar) in 135 aa overlap (64-190:71-202)
40 50 60 70 80 90
pF1KE4 DPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSE--
: :.. .. .. .. :: : ....
XP_011 SVARLSSKSVNAQVTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKPCPPGERKARDC
50 60 70 80 90 100
100 110 120 130 140
pF1KE4 -YTGA---CNPCTEGVDYTIASNNLPSCLLCTVCKSGQ--TNKSSCTTTRDTVCQCEKGS
.: : :: :: .:: .. .: : .: :. . .:: :..: :.:. .
XP_011 TVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNF
110 120 130 140 150 160
150 160 170 180 190 200
pF1KE4 FQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGM
: ... : : : : : .:..: .:: :. :::.:.. :. :
XP_011 FCNSTVCEHCDPC-TKCEHGIIK--ECTLTSNTKCKEEGSRSNLGWLCLLLLPIPLIVWV
170 180 190 200 210
210 220 230 240 250 260
pF1KE4 LASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCP
XP_011 KRKEVQKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVR
220 230 240 250 260 270
386 residues in 1 query sequences
64369986 residues in 92320 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:41:36 2019 done: Thu Oct 24 21:41:37 2019
Total Scan time: 5.050 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]