Result of FASTA (omim) for
pF1KE5338
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5338, 264 aa
1>>>pF1KE5338 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
64092750 residues in 91774 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7295+/-0.000282; mu= 14.1775+/- 0.018
mean_var=84.5019+/-17.041, 0's: 0 Z-trim(119.1): 20 B-trim: 917 in 1/54
Lambda= 0.139521
statistics sampled from 34040 (34062) to 34040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.371), width: 16
Scan time: 3.530
The best scores are: opt bits E(91774)
NP_001018016 (OMIM: 158340,174000) mucin-1 isoform ( 264) 1714 354.1 1.7e-97
NP_001018017 (OMIM: 158340,174000) mucin-1 isoform ( 255) 1547 320.4 2.1e-87
NP_002447 (OMIM: 158340,174000) mucin-1 isoform 1 ( 273) 1352 281.2 1.5e-75
NP_001191216 (OMIM: 158340,174000) mucin-1 isoform ( 282) 1334 277.6 1.9e-74
NP_001191214 (OMIM: 158340,174000) mucin-1 isoform ( 475) 1332 277.4 3.7e-74
NP_001191215 (OMIM: 158340,174000) mucin-1 isoform ( 484) 1332 277.4 3.8e-74
NP_001191220 (OMIM: 158340,174000) mucin-1 isoform ( 241) 1181 246.8 3e-65
NP_001191219 (OMIM: 158340,174000) mucin-1 isoform ( 217) 1161 242.7 4.6e-64
NP_001191218 (OMIM: 158340,174000) mucin-1 isoform ( 238) 1161 242.7 4.9e-64
NP_001191223 (OMIM: 158340,174000) mucin-1 isoform ( 230) 1055 221.4 1.3e-57
NP_001191221 (OMIM: 158340,174000) mucin-1 isoform ( 239) 1055 221.4 1.3e-57
NP_001191217 (OMIM: 158340,174000) mucin-1 isoform ( 219) 945 199.2 5.6e-51
NP_001037855 (OMIM: 158340,174000) mucin-1 isoform ( 203) 781 166.2 4.6e-41
NP_001191225 (OMIM: 158340,174000) mucin-1 isoform ( 212) 781 166.2 4.8e-41
NP_001191224 (OMIM: 158340,174000) mucin-1 isoform ( 189) 707 151.3 1.3e-36
NP_001191222 (OMIM: 158340,174000) mucin-1 isoform ( 198) 584 126.5 3.9e-29
NP_001037857 (OMIM: 158340,174000) mucin-1 isoform ( 159) 533 116.2 4e-26
NP_001037856 (OMIM: 158340,174000) mucin-1 isoform ( 150) 515 112.6 4.7e-25
NP_001191226 (OMIM: 158340,174000) mucin-1 isoform ( 177) 515 112.6 5.4e-25
NP_001037858 (OMIM: 158340,174000) mucin-1 isoform ( 158) 215 52.2 7.4e-07
>>NP_001018016 (OMIM: 158340,174000) mucin-1 isoform 2 p (264 aa)
initn: 1714 init1: 1714 opt: 1714 Z-score: 1872.1 bits: 354.1 E(91774): 1.7e-97
Smith-Waterman score: 1714; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
190 200 210 220 230 240
250 260
pF1KE5 VSAGNGGSSLSYTNPAVAATSANL
::::::::::::::::::::::::
NP_001 VSAGNGGSSLSYTNPAVAATSANL
250 260
>>NP_001018017 (OMIM: 158340,174000) mucin-1 isoform 3 p (255 aa)
initn: 1545 init1: 1545 opt: 1547 Z-score: 1690.7 bits: 320.4 E(91774): 2.1e-87
Smith-Waterman score: 1630; 96.6% identity (96.6% similar) in 264 aa overlap (1-264:1-255)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE5 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
180 190 200 210 220 230
250 260
pF1KE5 VSAGNGGSSLSYTNPAVAATSANL
::::::::::::::::::::::::
NP_001 VSAGNGGSSLSYTNPAVAATSANL
240 250
>>NP_002447 (OMIM: 158340,174000) mucin-1 isoform 1 prec (273 aa)
initn: 1460 init1: 1332 opt: 1352 Z-score: 1478.1 bits: 281.2 E(91774): 1.5e-75
Smith-Waterman score: 1584; 90.4% identity (90.4% similar) in 282 aa overlap (1-264:1-273)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_002 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50
70 80 90 100
pF1KE5 NA------------------FNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK
:: ::::::::::::::::::::::::::::::::::::::::
NP_002 NALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE5 FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE5 AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH
180 190 200 210 220 230
230 240 250 260
pF1KE5 THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
::::::::::::::::::::::::::::::::::::::::::
NP_002 THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
240 250 260 270
>>NP_001191216 (OMIM: 158340,174000) mucin-1 isoform 11 (282 aa)
initn: 1332 init1: 1332 opt: 1334 Z-score: 1458.3 bits: 277.6 E(91774): 1.9e-74
Smith-Waterman score: 1668; 93.6% identity (93.6% similar) in 282 aa overlap (1-264:1-282)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50 60
70 80 90 100
pF1KE5 NA------------------FNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK
:: ::::::::::::::::::::::::::::::::::::::::
NP_001 NALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE5 FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE5 AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH
190 200 210 220 230 240
230 240 250 260
pF1KE5 THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
::::::::::::::::::::::::::::::::::::::::::
NP_001 THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
250 260 270 280
>>NP_001191214 (OMIM: 158340,174000) mucin-1 isoform 9 p (475 aa)
initn: 1531 init1: 1332 opt: 1332 Z-score: 1452.9 bits: 277.4 E(91774): 3.7e-74
Smith-Waterman score: 1340; 79.4% identity (87.1% similar) in 272 aa overlap (2-264:204-475)
10 20 30
pF1KE5 MTPGTQS-PFFLLLLLTVLTATTAPKPATVV
::...: :: . . .: : . . .
NP_001 PVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSIPSHHSDTPTTLASHSTKTD
180 190 200 210 220 230
40 50 60 70 80
pF1KE5 TGSGHASSTPG--GEKETSATQRSSVPS------STEKNAFNSSLEDPSTDYYQELQRDI
..: : :..: . ..... : :. : . ::::::::::::::::::::
NP_001 ASSTHHSTVPPLTSSNHSTSPQLSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDI
240 250 260 270 280 290
90 100 110 120 130 140
pF1KE5 SEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYN
300 310 320 330 340 350
150 160 170 180 190 200
pF1KE5 LTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ
360 370 380 390 400 410
210 220 230 240 250 260
pF1KE5 LDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSA
420 430 440 450 460 470
pF1KE5 NL
::
NP_001 NL
>--
initn: 229 init1: 213 opt: 298 Z-score: 328.1 bits: 69.2 E(91774): 1.7e-11
Smith-Waterman score: 298; 85.5% identity (85.5% similar) in 62 aa overlap (1-62:1-53)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
::
NP_001 NAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPALGST
60 70 80 90 100 110
>>NP_001191215 (OMIM: 158340,174000) mucin-1 isoform 10 (484 aa)
initn: 1700 init1: 1332 opt: 1332 Z-score: 1452.8 bits: 277.4 E(91774): 3.8e-74
Smith-Waterman score: 1340; 79.4% identity (87.1% similar) in 272 aa overlap (2-264:213-484)
10 20 30
pF1KE5 MTPGTQS-PFFLLLLLTVLTATTAPKPATVV
::...: :: . . .: : . . .
NP_001 PVHNVTSASGSASGSASTLVHNGTSARATTTPASKSTPFSIPSHHSDTPTTLASHSTKTD
190 200 210 220 230 240
40 50 60 70 80
pF1KE5 TGSGHASSTPG--GEKETSATQRSSVPS------STEKNAFNSSLEDPSTDYYQELQRDI
..: : :..: . ..... : :. : . ::::::::::::::::::::
NP_001 ASSTHHSTVPPLTSSNHSTSPQLSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDI
250 260 270 280 290 300
90 100 110 120 130 140
pF1KE5 SEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYN
310 320 330 340 350 360
150 160 170 180 190 200
pF1KE5 LTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ
370 380 390 400 410 420
210 220 230 240 250 260
pF1KE5 LDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSA
430 440 450 460 470 480
pF1KE5 NL
::
NP_001 NL
>--
initn: 398 init1: 382 opt: 382 Z-score: 419.3 bits: 86.1 E(91774): 1.4e-16
Smith-Waterman score: 382; 100.0% identity (100.0% similar) in 62 aa overlap (1-62:1-62)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
::
NP_001 NAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPATEPASGSAATWGQDVTSVPVTRPALGST
70 80 90 100 110 120
>>NP_001191220 (OMIM: 158340,174000) mucin-1 isoform 15 (241 aa)
initn: 1181 init1: 1181 opt: 1181 Z-score: 1292.9 bits: 246.8 E(91774): 3e-65
Smith-Waterman score: 1507; 91.3% identity (91.3% similar) in 264 aa overlap (1-264:1-241)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
::: ::::::::::::::::::::::::::::::::::
NP_001 NAF-----------------------LQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
70 80 90
130 140 150 160 170 180
pF1KE5 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
160 170 180 190 200 210
250 260
pF1KE5 VSAGNGGSSLSYTNPAVAATSANL
::::::::::::::::::::::::
NP_001 VSAGNGGSSLSYTNPAVAATSANL
220 230 240
>>NP_001191219 (OMIM: 158340,174000) mucin-1 isoform 14 (217 aa)
initn: 1279 init1: 1161 opt: 1161 Z-score: 1271.8 bits: 242.7 E(91774): 4.6e-64
Smith-Waterman score: 1297; 82.2% identity (82.2% similar) in 264 aa overlap (1-264:1-217)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::: ::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLT---------------------GGEKETSATQRSSVPSSTEK
10 20 30
70 80 90 100 110 120
pF1KE5 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
:: ::::::::::::::::::::::::::::::::
NP_001 NA--------------------------IYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
40 50 60 70
130 140 150 160 170 180
pF1KE5 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
80 90 100 110 120 130
190 200 210 220 230 240
pF1KE5 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
140 150 160 170 180 190
250 260
pF1KE5 VSAGNGGSSLSYTNPAVAATSANL
::::::::::::::::::::::::
NP_001 VSAGNGGSSLSYTNPAVAATSANL
200 210
>>NP_001191218 (OMIM: 158340,174000) mucin-1 isoform 13 (238 aa)
initn: 1529 init1: 1161 opt: 1161 Z-score: 1271.2 bits: 242.7 E(91774): 4.9e-64
Smith-Waterman score: 1481; 90.2% identity (90.2% similar) in 264 aa overlap (1-264:1-238)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
:: ::::::::::::::::::::::::::::::::
NP_001 NA--------------------------IYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
70 80 90
130 140 150 160 170 180
pF1KE5 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
160 170 180 190 200 210
250 260
pF1KE5 VSAGNGGSSLSYTNPAVAATSANL
::::::::::::::::::::::::
NP_001 VSAGNGGSSLSYTNPAVAATSANL
220 230
>>NP_001191223 (OMIM: 158340,174000) mucin-1 isoform 18 (230 aa)
initn: 1254 init1: 1055 opt: 1055 Z-score: 1156.1 bits: 221.4 E(91774): 1.3e-57
Smith-Waterman score: 1305; 82.6% identity (84.5% similar) in 264 aa overlap (1-264:1-230)
10 20 30 40 50 60
pF1KE5 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_001 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
:: . :.: .. : ::. ::::::::::::::::
NP_001 NA----IPAPTTT------KSCRETFLKW---------------PGSVVVQLTLAFREGT
60 70 80
130 140 150 160 170 180
pF1KE5 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE5 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
150 160 170 180 190 200
250 260
pF1KE5 VSAGNGGSSLSYTNPAVAATSANL
::::::::::::::::::::::::
NP_001 VSAGNGGSSLSYTNPAVAATSANL
210 220 230
264 residues in 1 query sequences
64092750 residues in 91774 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Jul 16 16:04:18 2019 done: Tue Jul 16 16:04:18 2019
Total Scan time: 3.530 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]