FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5416, 346 aa
  1>>>pF1KE5416 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8571+/-0.000329; mu= 0.7495+/- 0.021
 mean_var=186.2699+/-37.544, 0's: 0 Z-trim(121.5): 11  B-trim: 39 in 1/59
 Lambda= 0.093973
 statistics sampled from 38227 (38238) to 38227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.448), width:  16
 Scan time:  9.540

The best scores are:                                      opt bits E(85289)
NP_055215 (OMIM: 609484) ly6/PLAUR domain-containi ( 346) 2397 336.7 4.5e-92


>>NP_055215 (OMIM: 609484) ly6/PLAUR domain-containing p  (346 aa)
 initn: 2397 init1: 2397 opt: 2397  Z-score: 1774.1  bits: 336.7 E(85289): 4.5e-92
Smith-Waterman score: 2397; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KE5 MDPARKAGAQAMIWTAGWLLLLLLRGGAQALECYSCVQKADDGCSPNKMKTVKCAPGVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MDPARKAGAQAMIWTAGWLLLLLLRGGAQALECYSCVQKADDGCSPNKMKTVKCAPGVDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 CTEAVGAVETIHGQFSLAVRGCGSGLPGKNDRGLDLHGLLAFIQLQQCAQDRCNAKLNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CTEAVGAVETIHGQFSLAVRGCGSGLPGKNDRGLDLHGLLAFIQLQQCAQDRCNAKLNLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 SRALDPAGNESAYPPNGVECYSCVGLSREACQGTSPPVVSCYNASDHVYKGCFDGNVTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SRALDPAGNESAYPPNGVECYSCVGLSREACQGTSPPVVSCYNASDHVYKGCFDGNVTLT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AANVTVSLPVRGCVQDEFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTYFSPRIPPLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AANVTVSLPVRGCVQDEFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTYFSPRIPPLVR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LPPPEPTTVASTTSVTTSTSAPVRPTSTTKPMPAPTSQTPRQGVEHEASRDEEPRLTGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LPPPEPTTVASTTSVTTSTSAPVRPTSTTKPMPAPTSQTPRQGVEHEASRDEEPRLTGGA
              250       260       270       280       290       300

              310       320       330       340      
pF1KE5 AGHQDRSNSGQYPAKGGPQQPHNKGCVAPTAGLAALLLAVAAGVLL
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AGHQDRSNSGQYPAKGGPQQPHNKGCVAPTAGLAALLLAVAAGVLL
              310       320       330       340      




346 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:22:11 2016 done: Sun Nov  6 14:22:12 2016
 Total Scan time:  9.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]