FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6561, 160 aa
  1>>>pF1KE6561     160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9351+/-0.000875; mu= 14.2271+/- 0.052
 mean_var=64.7320+/-13.495, 0's: 0 Z-trim(105.9): 41  B-trim: 65 in 1/50
 Lambda= 0.159410
 statistics sampled from 8642 (8678) to 8642 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.267), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS11168.1 PMP22 gene_id:5376|Hs108|chr17         ( 160) 1052 250.3 3.8e-67
CCDS82078.1 PMP22 gene_id:5376|Hs108|chr17         ( 118)  688 166.5 4.7e-42
CCDS12715.1 EMP3 gene_id:2014|Hs108|chr19          ( 163)  448 111.4 2.5e-25
CCDS10541.1 EMP2 gene_id:2013|Hs108|chr16          ( 167)  432 107.7 3.3e-24
CCDS8660.1 EMP1 gene_id:2012|Hs108|chr12           ( 157)  426 106.3 8.1e-24


>>CCDS11168.1 PMP22 gene_id:5376|Hs108|chr17              (160 aa)
 initn: 1052 init1: 1052 opt: 1052  Z-score: 1319.0  bits: 250.3 E(32554): 3.8e-67
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KE6 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVR
               70        80        90       100       110       120

              130       140       150       160
pF1KE6 HPEWHLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKRE
       ::::::::::::::::::::::::::::::::::::::::
CCDS11 HPEWHLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKRE
              130       140       150       160

>>CCDS82078.1 PMP22 gene_id:5376|Hs108|chr17              (118 aa)
 initn: 688 init1: 688 opt: 688  Z-score: 868.5  bits: 166.5 E(32554): 4.7e-42
Smith-Waterman score: 688; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE6 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVR
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS82 WLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAESNSSQMCGYRD  
               70        80        90       100       110          

              130       140       150       160
pF1KE6 HPEWHLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKRE

>>CCDS12715.1 EMP3 gene_id:2014|Hs108|chr19               (163 aa)
 initn: 520 init1: 260 opt: 448  Z-score: 568.2  bits: 111.4 E(32554): 2.5e-25
Smith-Waterman score: 448; 43.3% identity (73.8% similar) in 164 aa overlap (1-160:1-163)

               10        20         30        40        50         
pF1KE6 MLLLLLSIIVLHVAVLVLLFVSTI-VSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPN
       : :::: . .::. .:.::::.:.  : : . . .. .:: .:. ... ..  : . : :
CCDS12 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSEN
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE6 EWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTV
        ::..::. :.::.:.  ::..::. ::.:. .:: :: ::. :. ... :...: ::..
CCDS12 GWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI
               70        80        90       100       110       120

     120       130          140       150       160
pF1KE6 RHPEWHLNSDY---SYGFAYILAWVAFPLALLSGVIYVILRKRE
        : :  :..     :.:. . ::::::::::.::.::. :::::
CCDS12 -HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE
               130       140       150       160   

>>CCDS10541.1 EMP2 gene_id:2013|Hs108|chr16               (167 aa)
 initn: 454 init1: 211 opt: 432  Z-score: 548.2  bits: 107.7 E(32554): 3.3e-24
Smith-Waterman score: 432; 42.9% identity (74.1% similar) in 170 aa overlap (1-160:1-167)

               10        20        30        40        50        60
pF1KE6 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNE
       ::.::  ::..:..  .:::..:. . : ::.   .:.:. :..... .:   ...: .:
CCDS10 MLVLLAFIIAFHITSAALLFIATVDNAWWVGDEFFADVWRICTNNTNCTV---INDSFQE
               10        20        30        40        50          

                 70        80        90       100       110        
pF1KE6 W--LQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYT
       .  ::.:::::::: :.  ...:.:  ::: : .: :: .:.:.:... :::: ::.:::
CCDS10 YSTLQAVQATMILSTILCCIAFFIFVLQLFRLKQGERFVLTSIIQLMSCLCVMIAASIYT
        60        70        80        90       100       110       

      120               130       140       150       160
pF1KE6 VRHPEWH--------LNSDYSYGFAYILAWVAFPLALLSGVIYVILRKRE
        :. . :        .. . :::..::::::::  ...::..:.:::::.
CCDS10 DRREDIHDKNAKFYPVTREGSYGYSYILAWVAFACTFISGMMYLILRKRK
       120       130       140       150       160       

>>CCDS8660.1 EMP1 gene_id:2012|Hs108|chr12                (157 aa)
 initn: 409 init1: 194 opt: 426  Z-score: 541.1  bits: 106.3 E(32554): 8.1e-24
Smith-Waterman score: 426; 39.8% identity (77.0% similar) in 161 aa overlap (1-159:1-157)

               10        20        30          40        50        
pF1KE6 MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGN--GHATDLWQNCSTSSSGNVHHCFSSSP
       ::.:: .:.:.:.:....::::::.. :.:.:    .. ::.::.. : ..    .: . 
CCDS86 MLVLLAGIFVVHIATVIMLFVSTIANVWLVSNTVDASVGLWKNCTNISCSD---SLSYAS
               10        20        30        40        50          

       60        70        80        90       100       110        
pF1KE6 NEWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYT
       .. :..::: ::::::: ...:..:  ::::. ::.::...:   ..  ::.. ...:::
CCDS86 EDALKTVQAFMILSIIFCVIALLVFVFQLFTMEKGNRFFLSGATTLVCWLCILVGVSIYT
        60        70        80        90       100       110       

      120       130       140       150       160
pF1KE6 VRHPEWHLNSDYSYGFAYILAWVAFPLALLSGVIYVILRKRE
         :   . ...: .:..:::.:. : .... ::.:..:::. 
CCDS86 -SHYANRDGTQYHHGYSYILGWICFCFSFIIGVLYLVLRKK 
        120       130       140       150        




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov 28 14:05:25 2016 done: Mon Nov 28 14:05:25 2016
 Total Scan time:  1.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]