FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6669, 296 aa
  1>>>pF1KE6669     296 - 296 aa - 296 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0005+/-0.000826; mu= 10.9877+/- 0.049
 mean_var=59.3663+/-11.802, 0's: 0 Z-trim(105.6): 14  B-trim: 47 in 1/49
 Lambda= 0.166458
 statistics sampled from 8595 (8599) to 8595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.257), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(33420)
CCDS5472.1 BLVRA gene_id:644|Hs109|chr7            ( 296) 1922 469.9  1e-132


>>CCDS5472.1 BLVRA gene_id:644|Hs109|chr7                 (296 aa)
 initn: 1922 init1: 1922 opt: 1922  Z-score: 2496.5  bits: 469.9 E(33420): 1e-132
Smith-Waterman score: 1922; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KE6 MNAEPERKFGVVVVGVGRAGSVRMRDLRNPHPSSAFLNLIGFVSRRELGSIDGVQQISLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MNAEPERKFGVVVVGVGRAGSVRMRDLRNPHPSSAFLNLIGFVSRRELGSIDGVQQISLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DALSSQEVEVAYICSESSSHEDYIRQFLNAGKHVLVEYPMTLSLAAAQELWELAEQKGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DALSSQEVEVAYICSESSSHEDYIRQFLNAGKHVLVEYPMTLSLAAAQELWELAEQKGKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LHEEHVELLMEEFAFLKKEVVGKDLLKGSLLFTAGPLEEERFGFPAFSGISRLTWLVSLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LHEEHVELLMEEFAFLKKEVVGKDLLKGSLLFTAGPLEEERFGFPAFSGISRLTWLVSLF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 GELSLVSATLEERKEDQYMKMTVCLETEKKSPLSWIEEKGPGLKRNRYLSFHFKSGSLEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GELSLVSATLEERKEDQYMKMTVCLETEKKSPLSWIEEKGPGLKRNRYLSFHFKSGSLEN
              190       200       210       220       230       240

              250       260       270       280       290      
pF1KE6 VPNVGVNKNIFLKDQNIFVQKLLGQFSEKELAAEKKRILHCLGLAEEIQKYCCSRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VPNVGVNKNIFLKDQNIFVQKLLGQFSEKELAAEKKRILHCLGLAEEIQKYCCSRK
              250       260       270       280       290      




296 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:41:08 2019 done: Thu Oct 24 21:41:08 2019
 Total Scan time:  1.170 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]