FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6679, 328 aa
  1>>>pF1KE6679     328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7718+/-0.00106; mu= -0.4736+/- 0.064
 mean_var=350.4996+/-71.191, 0's: 0 Z-trim(115.4): 116  B-trim: 427 in 1/51
 Lambda= 0.068506
 statistics sampled from 16078 (16194) to 16078 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.485), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(33420)
CCDS4971.1 COL9A1 gene_id:1297|Hs109|chr6          ( 921) 2295 240.4 4.4e-63


>>CCDS4971.1 COL9A1 gene_id:1297|Hs109|chr6               (921 aa)
 initn: 2294 init1: 2294 opt: 2295  Z-score: 1246.1  bits: 240.4 E(33420): 4.4e-63
Smith-Waterman score: 2295; 99.1% identity (99.4% similar) in 330 aa overlap (1-328:1-330)

               10        20        30        40        50        60
pF1KE6 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
              250       260       270       280       290       300

              310       320                                        
pF1KE6 PGPPGPAGEPGKPGAPGKPGTPGAD--TSP                              
       :::::::::::::::::::::::::  :.:                              
CCDS49 PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP
              310       320       330       340       350       360




328 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:35:15 2019 done: Thu Oct 24 21:35:16 2019
 Total Scan time:  1.390 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]