Result of FASTA (omim) for
pF1KE6679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6679, 328 aa
1>>>pF1KE6679 328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
64369986 residues in 92320 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2675+/-0.000409; mu= 2.3651+/- 0.026
mean_var=375.3669+/-75.746, 0's: 0 Z-trim(123.2): 358 B-trim: 720 in 1/54
Lambda= 0.066198
statistics sampled from 43990 (44403) to 43990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.481), width: 16
Scan time: 4.340
The best scores are: opt bits E(92320)
NP_001842 (OMIM: 120210,614134,614135) collagen al ( 921) 2295 233.0 2e-60
XP_011533731 (OMIM: 120210,614134,614135) collagen ( 931) 2295 233.0 2e-60
XP_016865735 (OMIM: 120210,614134,614135) collagen ( 748) 1055 114.5 7.9e-25
NP_511040 (OMIM: 120210,614134,614135) collagen al ( 678) 473 58.8 4e-08
XP_011533732 (OMIM: 120210,614134,614135) collagen ( 688) 473 58.8 4e-08
XP_006710428 (OMIM: 120260,600204,614284) collagen ( 689) 355 47.6 0.0001
NP_001843 (OMIM: 120260,600204,614284) collagen al ( 689) 355 47.6 0.0001
XP_016855821 (OMIM: 120260,600204,614284) collagen ( 693) 355 47.6 0.0001
XP_016883155 (OMIM: 120270,600969,603932) collagen ( 486) 315 43.6 0.0011
XP_011526847 (OMIM: 120270,600969,603932) collagen ( 552) 315 43.6 0.0012
NP_001844 (OMIM: 120270,600969,603932) collagen al ( 684) 315 43.7 0.0014
XP_016867233 (OMIM: 608927) collagen alpha-1(XXVI) ( 311) 301 42.0 0.0022
XP_016867234 (OMIM: 608927) collagen alpha-1(XXVI) ( 311) 301 42.0 0.0022
XP_016867232 (OMIM: 608927) collagen alpha-1(XXVI) ( 429) 301 42.1 0.0027
NP_597714 (OMIM: 608927) collagen alpha-1(XXVI) ch ( 439) 301 42.2 0.0027
NP_001265492 (OMIM: 608927) collagen alpha-1(XXVI) ( 441) 301 42.2 0.0027
XP_011528177 (OMIM: 608926) EMI domain-containing ( 307) 291 41.0 0.0042
XP_016884078 (OMIM: 608926) EMI domain-containing ( 397) 293 41.3 0.0043
XP_011528176 (OMIM: 608926) EMI domain-containing ( 397) 293 41.3 0.0043
XP_011528175 (OMIM: 608926) EMI domain-containing ( 420) 293 41.4 0.0045
XP_011528174 (OMIM: 608926) EMI domain-containing ( 423) 293 41.4 0.0045
XP_011528172 (OMIM: 608926) EMI domain-containing ( 438) 293 41.4 0.0046
XP_011528171 (OMIM: 608926) EMI domain-containing ( 460) 293 41.4 0.0047
XP_011528170 (OMIM: 608926) EMI domain-containing ( 462) 293 41.4 0.0047
XP_011528173 (OMIM: 608926) EMI domain-containing ( 434) 291 41.2 0.0052
XP_011528178 (OMIM: 608926) EMI domain-containing ( 283) 284 40.3 0.0064
>>NP_001842 (OMIM: 120210,614134,614135) collagen alpha- (921 aa)
initn: 2294 init1: 2294 opt: 2295 Z-score: 1206.4 bits: 233.0 E(92320): 2e-60
Smith-Waterman score: 2295; 99.1% identity (99.4% similar) in 330 aa overlap (1-328:1-330)
10 20 30 40 50 60
pF1KE6 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
250 260 270 280 290 300
310 320
pF1KE6 PGPPGPAGEPGKPGAPGKPGTPGAD--TSP
::::::::::::::::::::::::: :.:
NP_001 PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP
310 320 330 340 350 360
>>XP_011533731 (OMIM: 120210,614134,614135) collagen alp (931 aa)
initn: 2294 init1: 2294 opt: 2295 Z-score: 1206.3 bits: 233.0 E(92320): 2e-60
Smith-Waterman score: 2295; 99.1% identity (99.4% similar) in 330 aa overlap (1-328:1-330)
10 20 30 40 50 60
pF1KE6 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
250 260 270 280 290 300
310 320
pF1KE6 PGPPGPAGEPGKPGAPGKPGTPGAD--TSP
::::::::::::::::::::::::: :.:
XP_011 PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP
310 320 330 340 350 360
>>XP_016865735 (OMIM: 120210,614134,614135) collagen alp (748 aa)
initn: 1054 init1: 1054 opt: 1055 Z-score: 567.4 bits: 114.5 E(92320): 7.9e-25
Smith-Waterman score: 1055; 98.0% identity (98.6% similar) in 147 aa overlap (184-328:1-147)
160 170 180 190 200 210
pF1KE6 VFSYKGLDGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKPRGPID
::::::::::::::::::::::::::::::
XP_016 MIGVERSSATLFVDCNRIESLPIKPRGPID
10 20 30
220 230 240 250 260 270
pF1KE6 IDGFAVLGKLADNPQVSVPFELQWMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDGFAVLGKLADNPQVSVPFELQWMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGE
40 50 60 70 80 90
280 290 300 310 320
pF1KE6 QGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGAD--TSP
:::::::::::::::::::::::::::::::::::::::::::::::::::: :.:
XP_016 QGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGS
100 110 120 130 140 150
XP_016 PGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPP
160 170 180 190 200 210
>>NP_511040 (OMIM: 120210,614134,614135) collagen alpha- (678 aa)
initn: 472 init1: 472 opt: 473 Z-score: 267.4 bits: 58.8 E(92320): 4e-08
Smith-Waterman score: 473; 93.8% identity (96.9% similar) in 64 aa overlap (267-328:24-87)
240 250 260 270 280 290
pF1KE6 WMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRG
.:::::::::::::::::::::::::::::
NP_511 MAWTARDRGALGLLLLGLCLCAAQRGPPGEQGPPGPPGPPGVPGIDGIDGDRG
10 20 30 40 50
300 310 320
pF1KE6 PKGPPGPPGPAGEPGKPGAPGKPGTPGAD--TSP
::::::::::::::::::::::::::::: :.:
NP_511 PKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPG
60 70 80 90 100 110
NP_511 RGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACP
120 130 140 150 160 170
>>XP_011533732 (OMIM: 120210,614134,614135) collagen alp (688 aa)
initn: 472 init1: 472 opt: 473 Z-score: 267.4 bits: 58.8 E(92320): 4e-08
Smith-Waterman score: 473; 93.8% identity (96.9% similar) in 64 aa overlap (267-328:24-87)
240 250 260 270 280 290
pF1KE6 WMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRG
.:::::::::::::::::::::::::::::
XP_011 MAWTARDRGALGLLLLGLCLCAAQRGPPGEQGPPGPPGPPGVPGIDGIDGDRG
10 20 30 40 50
300 310 320
pF1KE6 PKGPPGPPGPAGEPGKPGAPGKPGTPGAD--TSP
::::::::::::::::::::::::::::: :.:
XP_011 PKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPG
60 70 80 90 100 110
XP_011 RGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACP
120 130 140 150 160 170
>>XP_006710428 (OMIM: 120260,600204,614284) collagen alp (689 aa)
initn: 809 init1: 355 opt: 355 Z-score: 206.5 bits: 47.6 E(92320): 0.0001
Smith-Waterman score: 355; 75.9% identity (77.6% similar) in 58 aa overlap (268-325:26-83)
240 250 260 270 280 290
pF1KE6 MLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGP
::::::.::::::::::::: :::::: ::
XP_006 MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGP
10 20 30 40 50
300 310 320
pF1KE6 KGPPGPPGPAGEPGKPGAPGKPGTPGADTSP
: ::::: ::::: : : : :: :
XP_006 PGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
60 70 80 90 100 110
>>NP_001843 (OMIM: 120260,600204,614284) collagen alpha- (689 aa)
initn: 809 init1: 355 opt: 355 Z-score: 206.5 bits: 47.6 E(92320): 0.0001
Smith-Waterman score: 355; 75.9% identity (77.6% similar) in 58 aa overlap (268-325:26-83)
240 250 260 270 280 290
pF1KE6 MLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGP
::::::.::::::::::::: :::::: ::
NP_001 MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGP
10 20 30 40 50
300 310 320
pF1KE6 KGPPGPPGPAGEPGKPGAPGKPGTPGADTSP
: ::::: ::::: : : : :: :
NP_001 PGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
60 70 80 90 100 110
>>XP_016855821 (OMIM: 120260,600204,614284) collagen alp (693 aa)
initn: 809 init1: 355 opt: 355 Z-score: 206.4 bits: 47.6 E(92320): 0.0001
Smith-Waterman score: 355; 75.9% identity (77.6% similar) in 58 aa overlap (268-325:26-83)
240 250 260 270 280 290
pF1KE6 MLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGP
::::::.::::::::::::: :::::: ::
XP_016 MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGP
10 20 30 40 50
300 310 320
pF1KE6 KGPPGPPGPAGEPGKPGAPGKPGTPGADTSP
: ::::: ::::: : : : :: :
XP_016 PGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
60 70 80 90 100 110
>>XP_016883155 (OMIM: 120270,600969,603932) collagen alp (486 aa)
initn: 808 init1: 312 opt: 315 Z-score: 187.5 bits: 43.6 E(92320): 0.0011
Smith-Waterman score: 315; 70.2% identity (75.4% similar) in 57 aa overlap (272-325:29-85)
250 260 270 280 290 300
pF1KE6 CDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPP
: :::::::::: :: :::::. :: : :
XP_016 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLP
10 20 30 40 50
310 320
pF1KE6 GPPGPAGEPGKPGAPGK---PGTPGADTSP
::::: : ::::: ::. :: ::.:
XP_016 GPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKG
60 70 80 90 100 110
>>XP_011526847 (OMIM: 120270,600969,603932) collagen alp (552 aa)
initn: 1029 init1: 312 opt: 315 Z-score: 186.9 bits: 43.6 E(92320): 0.0012
Smith-Waterman score: 315; 70.2% identity (75.4% similar) in 57 aa overlap (272-325:29-85)
250 260 270 280 290 300
pF1KE6 CDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPP
: :::::::::: :: :::::. :: : :
XP_011 MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLP
10 20 30 40 50
310 320
pF1KE6 GPPGPAGEPGKPGAPGK---PGTPGADTSP
::::: : ::::: ::. :: ::.:
XP_011 GPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKG
60 70 80 90 100 110
328 residues in 1 query sequences
64369986 residues in 92320 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:35:16 2019 done: Thu Oct 24 21:35:17 2019
Total Scan time: 4.340 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]