FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6687, 232 aa
  1>>>pF1KE6687     232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7925+/-0.000598; mu= 13.6432+/- 0.036
 mean_var=93.8911+/-18.744, 0's: 0 Z-trim(115.0): 6  B-trim: 50 in 1/51
 Lambda= 0.132362
 statistics sampled from 15595 (15598) to 15595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.479), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS11589.1 NOG gene_id:9241|Hs108|chr17           ( 232) 1660 326.0 1.3e-89


>>CCDS11589.1 NOG gene_id:9241|Hs108|chr17                (232 aa)
 initn: 1660 init1: 1660 opt: 1660  Z-score: 1722.2  bits: 326.0 E(32554): 1.3e-89
Smith-Waterman score: 1660; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KE6 MERCPSLGVTLYALVVVLGLRATPAGGQHYLHIRPAPSDNLPLVDLIEHPDPIFDPKEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MERCPSLGVTLYALVVVLGLRATPAGGQHYLHIRPAPSDNLPLVDLIEHPDPIFDPKEKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LNETLLRSLLGGHYDPGFMATSPPEDRPGGGGGAAGGAEDLAELDQLLRQRPSGAMPSEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LNETLLRSLLGGHYDPGFMATSPPEDRPGGGGGAAGGAEDLAELDQLLRQRPSGAMPSEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KGLEFSEGLAQGKKQRLSKKLRRKLQMWLWSQTFCPVLYAWNDLGSRFWPRYVKVGSCFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KGLEFSEGLAQGKKQRLSKKLRRKLQMWLWSQTFCPVLYAWNDLGSRFWPRYVKVGSCFS
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KE6 KRSCSVPEGMVCKPSKSVHLTVLRWRCQRRGGQRCGWIPIQYPIISECKCSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRSCSVPEGMVCKPSKSVHLTVLRWRCQRRGGQRCGWIPIQYPIISECKCSC
              190       200       210       220       230  




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Jun  2 11:46:58 2017 done: Fri Jun  2 11:46:59 2017
 Total Scan time:  2.290 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]