FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9251, 561 aa
  1>>>pF1KE9251     561 - 561 aa - 561 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3805+/-0.00088; mu= 6.9009+/- 0.053
 mean_var=194.9930+/-38.166, 0's: 0 Z-trim(114.2): 7  B-trim: 61 in 1/51
 Lambda= 0.091847
 statistics sampled from 14924 (14929) to 14924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.447), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(33420)
CCDS42182.1 CENPT gene_id:80152|Hs109|chr16        ( 561) 3711 504.0 1.9e-142


>>CCDS42182.1 CENPT gene_id:80152|Hs109|chr16             (561 aa)
 initn: 3711 init1: 3711 opt: 3711  Z-score: 2670.9  bits: 504.0 E(33420): 1.9e-142
Smith-Waterman score: 3711; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)

               10        20        30        40        50        60
pF1KE9 MADHNPDSDSTPRTLLRRVLDTADPRTPRRPRSARAGARRALLETASPRKLSGQTRTIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MADHNPDSDSTPRTLLRRVLDTADPRTPRRPRSARAGARRALLETASPRKLSGQTRTIAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 GRSHGARSVGRSAHIQASGHLEEQTPRTLLKNILLTAPESSILMPESVVKPVPAPQAVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GRSHGARSVGRSAHIQASGHLEEQTPRTLLKNILLTAPESSILMPESVVKPVPAPQAVQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 SRQESSCGSLELQLPELEPPTTLAPGLLAPGRRKQRLRLSVFQQGVDQGLSLSQEPQGNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SRQESSCGSLELQLPELEPPTTLAPGLLAPGRRKQRLRLSVFQQGVDQGLSLSQEPQGNA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 DASSLTRSLNLTFATPLQPQSVQRPGLARRPPARRAVDVGAFLRDLRDTSLAPPNIVLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DASSLTRSLNLTFATPLQPQSVQRPGLARRPPARRAVDVGAFLRDLRDTSLAPPNIVLED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 TQPFSQPMVGSPNVYHSLPCTPHTGAEDAEQAAGRKTQSSGPGLQKNSPGKPAQFLAGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TQPFSQPMVGSPNVYHSLPCTPHTGAEDAEQAAGRKTQSSGPGLQKNSPGKPAQFLAGEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 EEVNAFALGFLSTSSGVSGEDEVEPLHDGVEEAEKKMEEEGVSVSEMEATGAQGPSRVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEVNAFALGFLSTSSGVSGEDEVEPLHDGVEEAEKKMEEEGVSVSEMEATGAQGPSRVEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 AEGHTEVTEAEGSQGTAEADGPGASSGDEDASGRAASPESASSTPESLQARRHHQFLEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AEGHTEVTEAEGSQGTAEADGPGASSGDEDASGRAASPESASSTPESLQARRHHQFLEPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 PAPGAAVLSSEPAEPLLVRHPPRPRTTGPRPRQDPHKAGLSHYVKLFSFYAKMPMERKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PAPGAAVLSSEPAEPLLVRHPPRPRTTGPRPRQDPHKAGLSHYVKLFSFYAKMPMERKAL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 EMVEKCLDKYFQHLCDDLEVFAAHAGRKTVKPEDLELLMRRQGLVTDQVSLHVLVERHLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EMVEKCLDKYFQHLCDDLEVFAAHAGRKTVKPEDLELLMRRQGLVTDQVSLHVLVERHLP
              490       500       510       520       530       540

              550       560 
pF1KE9 LEYRQLLIPCAYSGNSVFPAQ
       :::::::::::::::::::::
CCDS42 LEYRQLLIPCAYSGNSVFPAQ
              550       560 




561 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Aug  1 17:03:35 2019 done: Thu Aug  1 17:03:36 2019
 Total Scan time:  1.870 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]