FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9255, 1197 aa
  1>>>pF1KE9255     1197 - 1197 aa - 1197 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.6454+/-0.00202; mu= -16.3718+/- 0.118
 mean_var=492.3652+/-106.340, 0's: 0 Z-trim(105.4): 113  B-trim: 329 in 1/52
 Lambda= 0.057800
 statistics sampled from 8436 (8493) to 8436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.556), E-opt: 0.2 (0.254), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(33420)
CCDS35086.1 SMC2 gene_id:10592|Hs109|chr9          (1197) 7514 643.1 1.2e-183


>>CCDS35086.1 SMC2 gene_id:10592|Hs109|chr9               (1197 aa)
 initn: 7514 init1: 7514 opt: 7514  Z-score: 3410.8  bits: 643.1 E(33420): 1.2e-183
Smith-Waterman score: 7514; 100.0% identity (100.0% similar) in 1197 aa overlap (1-1197:1-1197)

               10        20        30        40        50        60
pF1KE9 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 AQKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AQKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 LAEDTKVRSAEELKEMQDKVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LAEDTKVRSAEELKEMQDKVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRSLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 DALAEAQRVNTKSQSAFDLKKKNLACEESKRKELEKNMVEDSKTLAAKEKEVKKITDGLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DALAEAQRVNTKSQSAFDLKKKNLACEESKRKELEKNMVEDSKTLAAKEKEVKKITDGLH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 ALQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQMMACKNDISKAQTEAKQAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ALQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQMMACKNDISKAQTEAKQAQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 MKLKHAQQELKNKQAEVKKMDSGYRKDQEALEAVKRLKEKLEAEMKKLNYEENKEESLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKLKHAQQELKNKQAEVKKMDSGYRKDQEALEAVKRLKEKLEAEMKKLNYEENKEESLLE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 KRRQLSRDIGRLKETYEALLARFPNLRFAYKDPEKNWNRNCVKGLVASLISVKDTSATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KRRQLSRDIGRLKETYEALLARFPNLRFAYKDPEKNWNRNCVKGLVASLISVKDTSATTA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE9 LELVAGERLYNVVVDTEVTGKKLLERGELKRRYTIIPLNKISARCIAPETLRVAQNLVGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LELVAGERLYNVVVDTEVTGKKLLERGELKRRYTIIPLNKISARCIAPETLRVAQNLVGP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE9 DNVHVALSLVEYKPELQKAMEFVFGTTFVCDNMDNAKKVAFDKRIMTRTVTLGGDVFDPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DNVHVALSLVEYKPELQKAMEFVFGTTFVCDNMDNAKKVAFDKRIMTRTVTLGGDVFDPH
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE9 GTLSGGARSQAASILTKFQELKDVQDELRIKENELRALEEELAGLKNTAEKYRQLKQQWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GTLSGGARSQAASILTKFQELKDVQDELRIKENELRALEEELAGLKNTAEKYRQLKQQWE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE9 MKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEVLENKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEVLENKM
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE9 KNAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KNAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE9 EAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVAKHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVAKHK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE9 EQNNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EQNNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTN
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE9 NPKEAGQRLQKLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKKKRIVENDKSKILTTIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NPKEAGQRLQKLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKKKRIVENDKSKILTTIE
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE9 DLDQKKNQALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEGQTVLDGLEFKVALGNTWKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DLDQKKNQALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEGQTVLDGLEFKVALGNTWKE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE9 NLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLRTHFTHSQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLRTHFTHSQF
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190       
pF1KE9 IVVSLKEGMFNNANVLFKTKFVDGVSTVARFTQCQNGKISKEAKSKAKPPKGAHVEV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IVVSLKEGMFNNANVLFKTKFVDGVSTVARFTQCQNGKISKEAKSKAKPPKGAHVEV
             1150      1160      1170      1180      1190       




1197 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Aug 16 14:31:48 2021 done: Mon Aug 16 14:31:49 2021
 Total Scan time:  2.480 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]