FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9610, 299 aa
  1>>>pF1KE9610     299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4701+/-0.000875; mu= 14.6156+/- 0.053
 mean_var=66.7762+/-13.244, 0's: 0 Z-trim(106.3): 13  B-trim: 169 in 1/48
 Lambda= 0.156951
 statistics sampled from 8908 (8911) to 8908 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS12282.1 RNASEH2A gene_id:10535|Hs108|chr19     ( 299) 1986 458.5 2.8e-129


>>CCDS12282.1 RNASEH2A gene_id:10535|Hs108|chr19          (299 aa)
 initn: 1986 init1: 1986 opt: 1986  Z-score: 2434.4  bits: 458.5 E(32554): 2.8e-129
Smith-Waterman score: 1986; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KE9 MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 EALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 ATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 CAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE9 AQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL
              250       260       270       280       290         




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Mar 10 10:43:33 2017 done: Fri Mar 10 10:43:33 2017
 Total Scan time:  2.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]