FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9610, 299 aa
  1>>>pF1KE9610     299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
  61573307 residues in 86401 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7936+/-0.00037; mu= 18.5274+/- 0.023
 mean_var=67.0317+/-13.322, 0's: 0 Z-trim(113.0): 11  B-trim: 176 in 1/48
 Lambda= 0.156651
 statistics sampled from 22347 (22352) to 22347 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.259), width:  16
 Scan time:  7.310

The best scores are:                                      opt bits E(86401)
NP_006388 (OMIM: 606034,610333) ribonuclease H2 su ( 299) 1986 457.7 1.3e-128
XP_006722682 (OMIM: 606034,610333) PREDICTED: ribo ( 255) 1674 387.1 1.9e-107


>>NP_006388 (OMIM: 606034,610333) ribonuclease H2 subuni  (299 aa)
 initn: 1986 init1: 1986 opt: 1986  Z-score: 2430.2  bits: 457.7 E(86401): 1.3e-128
Smith-Waterman score: 1986; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KE9 MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 EALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 ATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 CAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 CAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KE9 AQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL
              250       260       270       280       290         

>>XP_006722682 (OMIM: 606034,610333) PREDICTED: ribonucl  (255 aa)
 initn: 1674 init1: 1674 opt: 1674  Z-score: 2050.1  bits: 387.1 E(86401): 1.9e-107
Smith-Waterman score: 1674; 100.0% identity (100.0% similar) in 255 aa overlap (45-299:1-255)

           20        30        40        50        60        70    
pF1KE9 RLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLES
                                     ::::::::::::::::::::::::::::::
XP_006                               MVYAICYCPLPRLADLEALKVADSKTLLES
                                             10        20        30

           80        90       100       110       120       130    
pF1KE9 ERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVN
               40        50        60        70        80        90

          140       150       160       170       180       190    
pF1KE9 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ
              100       110       120       130       140       150

          200       210       220       230       240       250    
pF1KE9 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW
              160       170       180       190       200       210

          260       270       280       290         
pF1KE9 EDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL
       :::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL
              220       230       240       250     




299 residues in 1 query   sequences
61573307 residues in 86401 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Mar 10 10:43:34 2017 done: Fri Mar 10 10:43:35 2017
 Total Scan time:  7.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]