FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9612, 312 aa
  1>>>pF1KE9612     312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9180+/-0.000814; mu= 13.2707+/- 0.049
 mean_var=78.6322+/-15.319, 0's: 0 Z-trim(108.2): 17  B-trim: 4 in 1/52
 Lambda= 0.144635
 statistics sampled from 10047 (10051) to 10047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.309), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS9425.1 RNASEH2B gene_id:79621|Hs108|chr13      ( 312) 2045 436.0 1.8e-122
CCDS45047.1 RNASEH2B gene_id:79621|Hs108|chr13     ( 257) 1645 352.5 2.1e-97


>>CCDS9425.1 RNASEH2B gene_id:79621|Hs108|chr13           (312 aa)
 initn: 2045 init1: 2045 opt: 2045  Z-score: 2312.0  bits: 436.0 E(32554): 1.8e-122
Smith-Waterman score: 2045; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
              250       260       270       280       290       300

              310  
pF1KE9 FGVKNKKKIGKV
       ::::::::::::
CCDS94 FGVKNKKKIGKV
              310  

>>CCDS45047.1 RNASEH2B gene_id:79621|Hs108|chr13          (257 aa)
 initn: 1645 init1: 1645 opt: 1645  Z-score: 1862.3  bits: 352.5 E(32554): 2.1e-97
Smith-Waterman score: 1645; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE9 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
       :::::::                                                     
CCDS45 LPNPPSKMAAQRQKRGK                                           
              250                                                  




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Mar 10 10:44:09 2017 done: Fri Mar 10 10:44:09 2017
 Total Scan time:  2.460 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]