FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0021, 496 aa
  1>>>pF1KF0021 496 - 496 aa - 496 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2760+/-0.000994; mu= 17.7722+/- 0.060
 mean_var=58.0985+/-11.678, 0's: 0 Z-trim(103.5): 27  B-trim: 0 in 0/46
 Lambda= 0.168264
 statistics sampled from 7421 (7431) to 7421 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.228), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS32723.1 TMEM104 gene_id:54868|Hs108|chr17      ( 496) 3318 814.1       0
CCDS82201.1 TMEM104 gene_id:54868|Hs108|chr17      ( 314) 1595 395.7 3.8e-110


>>CCDS32723.1 TMEM104 gene_id:54868|Hs108|chr17           (496 aa)
 initn: 3318 init1: 3318 opt: 3318  Z-score: 4348.3  bits: 814.1 E(32554):    0
Smith-Waterman score: 3318; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)

               10        20        30        40        50        60
pF1KF0 MAGEITETGELYSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAGEITETGELYSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 TFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVQRRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVQRRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 NDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLAIFTLLLGPFTFFDVQKTKYLQILTSLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLAIFTLLLGPFTFFDVQKTKYLQILTSLM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 RWIAFAVMIVLALIRIGHGQGEGHPPLADFSGVRNLFGVCVYSFMCQHSLPSLITPVSSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RWIAFAVMIVLALIRIGHGQGEGHPPLADFSGVRNLFGVCVYSFMCQHSLPSLITPVSSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KF0 RHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KF0 PVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPVLVAFCTHDLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPVLVAFCTHDLES
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KF0 LVGITGAYAGTGIQYVIPAFLVYHCRRDTQLAFGCGVSNKHRSPFRHTFWVGFVLLWAFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVGITGAYAGTGIQYVIPAFLVYHCRRDTQLAFGCGVSNKHRSPFRHTFWVGFVLLWAFS
              430       440       450       460       470       480

              490      
pF1KF0 CFIFVTANIILSETKL
       ::::::::::::::::
CCDS32 CFIFVTANIILSETKL
              490      

>>CCDS82201.1 TMEM104 gene_id:54868|Hs108|chr17           (314 aa)
 initn: 1595 init1: 1595 opt: 1595  Z-score: 2091.0  bits: 395.7 E(32554): 3.8e-110
Smith-Waterman score: 1595; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KF0 MAGEITETGELYSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAGEITETGELYSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 TFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVQRRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVQRRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 NDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLAIFTLLLGPFTFFDVQKTKYLQILTSLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLAIFTLLLGPFTFFDVQKTKYLQILTSLM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 RWIAFAVMIVLALIRIGHGQGEGHPPLADFSGVRNLFGVCVYSFMCQHSLPSLITPVSSK
       :::                                                         
CCDS82 RWIDGPPGSVMGRAEEDASPAWPRSRCRCGGKLKLNSLYPTSATCMAPDAPGAGQVKVGV
              250       260       270       280       290       300




496 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:34:17 2016 done: Sat Nov  5 06:34:17 2016
 Total Scan time:  2.890 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]