Result of FASTA (ccds) for
pF1KF0034
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KF0034, 1312 aa
1>>>pF1KF0034 1312 - 1312 aa - 1312 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.9094+/-0.00114; mu= -10.8047+/- 0.069
mean_var=666.8136+/-137.003, 0's: 0 Z-trim(118.7): 40 B-trim: 561 in 1/55
Lambda= 0.049667
statistics sampled from 19713 (19752) to 19713 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.607), width: 16
Scan time: 7.920
The best scores are: opt bits E(32554)
CCDS33074.1 SCAF1 gene_id:58506|Hs108|chr19 (1312) 8856 650.5 8.7e-186
>>CCDS33074.1 SCAF1 gene_id:58506|Hs108|chr19 (1312 aa)
initn: 8856 init1: 8856 opt: 8856 Z-score: 3448.9 bits: 650.5 E(32554): 8.7e-186
Smith-Waterman score: 8856; 99.9% identity (99.9% similar) in 1312 aa overlap (1-1312:1-1312)
10 20 30 40 50 60
pF1KF0 MEEEDESRGKTEESGEDRGDGPPDRDPTLSPSAFILRAIQQAVGSSLQGDLPNDKDGSRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MEEEDESRGKTEESGEDRGDGPPDRDPTLSPSAFILRAIQQAVGSSLQGDLPNDKDGSRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KF0 HGLRWRRCRSPRSEPRSQESGGTDTATVLDMATDSFLAGLVSVLDPPDTWVPSRLDLRPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HGLRWRRCRSPRSEPRSQESGGTDTATVLDMATDSFLAGLVSVLDPPDTWVPSRLDLRPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KF0 ESEDMLELVAEVRIGDRDPIPLPVPSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ESEDMLELVAEVRIGDRDPIPLPVPSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KF0 DGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KF0 PPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISET
250 260 270 280 290 300
310 320 330 340 350 360
pF1KF0 LAGIYDDNSLSQDFPGDESPRPDAQPTQPTPAPGTPPQVDSTRADGAMRRRVFVVGTEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LAGIYDDNSLSQDFPGDESPRPDAQPTQPTPAPGTPPQVDSTRADGAMRRRVFVVGTEAE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KF0 ACREGKVSVEVVTAGGAALPPPLLPPGDSEIEEGEIVQPEEEPRLALSLFRPGGRAARPP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ACREGKVSVEVVTAGGAALPPPLLPPGDSEIEEGEIVQPEEEPRLALSLFRPGGRAARPT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KF0 PAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGEPAPAPPAADSRWGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGEPAPAPPAADSRWGGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KF0 DLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KF0 PAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KF0 RSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KF0 KAPAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSDPRGPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KAPAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSDPRGPSP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KF0 APASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALDGGDRDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 APASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALDGGDRDR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KF0 DRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KF0 IREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKT
850 860 870 880 890 900
910 920 930 940 950 960
pF1KF0 KVKAKAGAKKTKGTKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSCSQAAGTKGAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KVKAKAGAKKTKGTKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSCSQAAGTKGAE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KF0 ETSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ETSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGG
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KF0 AEEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPASRVSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AEEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPASRVSQ
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KF0 LPTLPPPMPWNLPAGVDCTTSGVLALTALLFKMEEANLASRAKAQELIQATNQILSHRKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LPTLPPPMPWNLPAGVDCTTSGVLALTALLFKMEEANLASRAKAQELIQATNQILSHRKP
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KF0 PSSLGMTPAPVPTSLGLPPGPSSYLLPGSLPLGGCGSTPPTPTGLAATSDKREGSSSSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSSLGMTPAPVPTSLGLPPGPSSYLLPGSLPLGGCGSTPPTPTGLAATSDKREGSSSSEG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KF0 RGDTDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RGDTDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINP
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310
pF1KF0 VKVSNLVRAYVQRYRYFRKHGRKPGDPPGPPRPPKEPGPPDKGGPGLPLPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VKVSNLVRAYVQRYRYFRKHGRKPGDPPGPPRPPKEPGPPDKGGPGLPLPPL
1270 1280 1290 1300 1310
1312 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:04:27 2016 done: Fri Nov 4 20:04:28 2016
Total Scan time: 7.920 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]