Result of FASTA (ccds) for
pF1KF0040
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KF0040, 1050 aa
1>>>pF1KF0040 1050 - 1050 aa - 1050 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1642+/-0.00126; mu= 12.7688+/- 0.075
mean_var=137.2796+/-28.811, 0's: 0 Z-trim(105.4): 266 B-trim: 15 in 1/50
Lambda= 0.109464
statistics sampled from 8110 (8418) to 8110 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.259), width: 16
Scan time: 3.660
The best scores are: opt bits E(32554)
CCDS32986.1 ANKRD27 gene_id:84079|Hs108|chr19 (1050) 6957 1111.6 0
CCDS6746.1 INVS gene_id:27130|Hs108|chr9 (1065) 367 70.9 1.6e-11
>>CCDS32986.1 ANKRD27 gene_id:84079|Hs108|chr19 (1050 aa)
initn: 6957 init1: 6957 opt: 6957 Z-score: 5944.8 bits: 1111.6 E(32554): 0
Smith-Waterman score: 6957; 99.8% identity (99.9% similar) in 1050 aa overlap (1-1050:1-1050)
10 20 30 40 50 60
pF1KF0 MALYDEDLLKNPFYLALQKCRPDLCSKVAQIHGIVLVPCKGSLSSSIQSTCQFESYILIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MALYDEDLLKNPFYLALQKCRPDLCSKVAQIHGIVLVPCKGSLSSSIQSTCQFESYILIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KF0 VEEHFQTLNGKDVFIQGNRIKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VEEHFQTLNGKDVFIQGNRIKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLEKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KF0 ESSEEPLAPSDPFSLKTIEDVREFLGRHSERFDRNIASFHRTFRECERKSLRHHIDSANA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ESSEEPLAPSDPFSLKTIEDVREFLGRHSERFDRNIASFHRTFRECERKSLRHHIDSANA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KF0 LYTKCLQQLLRDSHLKMLAKQEAQMNLMKQAVEIYVHHEIYNLIFKYVGTMEASEDAAFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LYTKCLQQLLRDSHLKMLAKQEAQMNLMKQAVEIYVHHEIYNLIFKYVGTMEASEDAAFN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KF0 KITRSLQDLQQKDIGVKPEFSFNIPRAKRELAQLNKCTSPQQKLVCLRKVVQLITQSPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KITRSLQDLQQKDIGVKPEFSFNIPRAKRELAQLNKCTSPQQKLVCLRKVVQLITQSPSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KF0 RVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KF0 YIRQGSLSAKPPESEGFGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YIRQGSLSAKPPESEGFGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KF0 DHDKDTVQKMCHPLCFCDDCEKLVSGRLNDPSVVTPFSRDDRGHTPLHVAAVCGQASLID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DHDKDTVQKMCHPLCFCDDCEKLVSGRLNDPSVVTPFSRDDRGHTPLHVAAVCGQASLID
430 440 450 460 470 480
490 500 510 520 530 540
pF1KF0 LLVSKGAMVNATDYHGATPLHLACQKGYQSVTLLLLHYKASAEVQDNNGNTPLHLACTYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLVSKGAMVNATDYHGATPLHLACQKGYQSVTLLLLHYKASAEVQDNNGNTPLHLACTYG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KF0 HEDCVKALVYYDVESCRLDIGNEKGDTPLHIAARWGYQGVIETLLQNGASTEIQNRLKET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HEDCVKALVYYDVESCRLDIGNEKGDTPLHIAARWGYQGVIETLLQNGASTEIQNRLKET
550 560 570 580 590 600
610 620 630 640 650 660
pF1KF0 PLKCALNSKILSVMEAYHLSFERRQKSSEAPVQSPQRSVDSISQESSTSSFSSMSAGSRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS32 PLKCALNSKILSVMEAYHLSFERRQKSSEAPVQSPQRSVDSISQESSTSSFSSMSASSRQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KF0 EETKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EETKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKC
670 680 690 700 710 720
730 740 750 760 770 780
pF1KF0 APAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIRLLLKHGANAGARNADQAVP
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS32 APAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KF0 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KF0 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KF0 ASLDDVAETDRKEYVTVKIRKKWNSKLYDLPDEPFTRQFYFVHSAGQFKGKTSREIMARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ASLDDVAETDRKEYVTVKIRKKWNSKLYDLPDEPFTRQFYFVHSAGQFKGKTSREIMARD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KF0 RSVPNLTEGSLHEPGRQSVTLRQNNLPAQSGSHAAEKGNSDWPERPGLTQTGPGHRRMLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RSVPNLTEGSLHEPGRQSVTLRQNNLPAQSGSHAAEKGNSDWPERPGLTQTGPGHRRMLR
970 980 990 1000 1010 1020
1030 1040 1050
pF1KF0 RHTVEDAVVSQGPEAAGPLSTPQEVSASRS
::::::::::::::::::::::::::::::
CCDS32 RHTVEDAVVSQGPEAAGPLSTPQEVSASRS
1030 1040 1050
>>CCDS6746.1 INVS gene_id:27130|Hs108|chr9 (1065 aa)
initn: 393 init1: 223 opt: 367 Z-score: 320.3 bits: 70.9 E(32554): 1.6e-11
Smith-Waterman score: 427; 24.9% identity (54.1% similar) in 651 aa overlap (407-1014:24-663)
380 390 400 410 420 430
pF1KF0 FGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQEDHDKDTVQKMCH-PLC
.:.. ..::. .. :: ... . ::
CCDS67 MNKSENLLFAGSSLASQVHAAAVNGDKGALQRLIVGNSALKDKEDQFGRTPLM
10 20 30 40 50
440 450 460 470 480 490
pF1KF0 FCDDCEKL--VSGRLNDPSVVTPFSRDDRGHTPLHVAAVCGQASLIDLLVSKGAMVNATD
.: ..: ... :. . :. ....: : ::.:: :. .. ::... : :
CCDS67 YCVLADRLDCADALLKAGADVNKTDHSQR--TALHLAAQKGNYRFMKLLLTRRANWMQKD
60 70 80 90 100 110
500 510 520 530 540 550
pF1KF0 YHGATPLHLACQKGYQSVTLLLLHYKASAEV--QDNNGNTPLHLACTYGHEDCVKALVYY
. :::::. .. . :::.. : .:: ::.: .: :: . :.. . :: :. .
CCDS67 LEEMTPLHLTTRHRSPKCLALLLKFMAPGEVDTQDKNKQTALHWSAYYNNPEHVKLLIKH
120 130 140 150 160 170
560 570 580 590 600
pF1KF0 DVESCRLDIGNEKGDTPLHIAARWGYQGVIETL--LQNGASTEI----QNRLKETPLKCA
: . . : . .: ::: :: ....:. . ..: :: :. .:::. :
CCDS67 DSN---IGIPDVEGKIPLHWAANHKDPSAVHTVRCILDAAPTESLLNWQDYEGRTPLHFA
180 190 200 210 220
610 620 630 640 650
pF1KF0 L---NSKILSVMEAYH----LSFER--RQKSSEAPVQSPQRSVDSISQESSTSSFSSMSA
. : ...:. .:. :.. : : . . . : . ........ : :
CCDS67 VADGNVTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKSGTIPSDSQ
230 240 250 260 270 280
660 670 680 690 700
pF1KF0 GSR--QEETKKDYREVEKLL----RAVADGDLEMVRYLLEW-----TEEDLEDAEDTVSA
:. . ..... :. :.. . :.::: : . : ... :. . :
CCDS67 GATPLHYAAQSNFAETVKVFLKHPSVKDDSDLEG-RTSFMWAAGKGSDDVLRTMLSLKSD
290 300 310 320 330 340
710 720 730 740 750 760
pF1KF0 ADPEFCHPLCQCPKCAPAQK-RLAKVP---ASGLGVNVTSQDGSSPLHVAALHGRADLIR
: .. : : . ... : .. :..:. .:: : :. :.:.
CCDS67 IDINMADKYGGTALHAAALSGHVSTVKLLLENNAQVDATDVMKHTPLFRACEMGHKDVIQ
350 360 370 380 390 400
770 780 790 800 810 820
pF1KF0 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG
:.: :: . . : :: : :. .: . :.... .:: .: .: ::: : ::
CCDS67 TLIKGGARVDLVDQDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGG
410 420 430 440 450 460
830 840 850 860 870
pF1KF0 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA-SVQVLNKRQR-TA
. . .:.:....:. : ....: :::: . . .. ...::: .: :. :...: :
CCDS67 YINCMAVLMENNADPNIQDKEGRTALHWSCNNGYLDAIKLLLDFAAFPNQMENNEERYTP
470 480 490 500 510 520
880 890 900 910 920 930
pF1KF0 VDCA---EQNSKIMELLQVVPSCVASLDDVAETDRKE-YVTVKIRKKW-NSKLYDLPDEP
.: : :.. :. .:. .:...:.: . : :.:: . . : . :
CCDS67 LDYALLGERHEVIQFMLEHGALSIAAIQDIAAFKIQAVYKGYKVRKAFRDRKNLLMKHEQ
530 540 550 560 570 580
940 950 960 970 980 990
pF1KF0 FTRQFYFVHSAGQFKGKTSREIMARDRSVPNLTEGSLHE-PGRQSVTLRQNNLPAQSGSH
. .. . . : : ... .: :: . .: :. :.: ::. : :.
CCDS67 LRKDAAAKKREEENKRKEAEQQKGR-RSPDSCRPQALPCLPSTQDVPSRQSRAP----SK
590 600 610 620 630 640
1000 1010 1020 1030 1040 1050
pF1KF0 AAEKGNSDWPERPGLTQTGPGHRRMLRRHTVEDAVVSQGPEAAGPLSTPQEVSASRS
:: .: .. .::
CCDS67 QPPAGNVAQGPEPRDSRGSPGGSLGGALQKEQHVSSDLQGTNSRRPNETAREHSKGQSAC
650 660 670 680 690 700
1050 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:32:47 2016 done: Sat Nov 5 20:32:48 2016
Total Scan time: 3.660 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]