FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0052, 328 aa
  1>>>pF1KF0052 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9367+/-0.000884; mu= 2.4077+/- 0.054
 mean_var=227.9007+/-46.483, 0's: 0 Z-trim(114.9): 14  B-trim: 384 in 2/52
 Lambda= 0.084957
 statistics sampled from 15442 (15449) to 15442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.475), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS44993.1 SUDS3 gene_id:64426|Hs108|chr12        ( 328) 2136 273.8 1.3e-73
CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14       ( 323)  456 67.9 1.3e-11


>>CCDS44993.1 SUDS3 gene_id:64426|Hs108|chr12             (328 aa)
 initn: 2136 init1: 2136 opt: 2136  Z-score: 1434.8  bits: 273.8 E(32554): 1.3e-73
Smith-Waterman score: 2136; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KF0 MSAAGLLAPAPAQAGAPPAPEYYPEEDEELESAEDDERSCRGRESDEDTEDASETDLAKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSAAGLLAPAPAQAGAPPAPEYYPEEDEELESAEDDERSCRGRESDEDTEDASETDLAKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 DEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 TEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGDSMEVKPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGDSMEVKPI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 MTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 LPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGANEIWVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGANEIWVR
              250       260       270       280       290       300

              310       320        
pF1KF0 KTSDSTKMRIYLGQLQRGLFVIRRRSAA
       ::::::::::::::::::::::::::::
CCDS44 KTSDSTKMRIYLGQLQRGLFVIRRRSAA
              310       320        

>>CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14            (323 aa)
 initn: 265 init1: 154 opt: 456  Z-score: 322.1  bits: 67.9 E(32554): 1.3e-11
Smith-Waterman score: 456; 29.0% identity (65.0% similar) in 303 aa overlap (26-323:31-321)

                    10        20        30        40        50     
pF1KF0      MSAAGLLAPAPAQAGAPPAPEYYPEEDEELESAEDDERSCRGRESDEDTEDASET
                                     :::. ::.  .: .  .. .::: :     
CCDS32 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KF0 --DLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNA
         :  .. :......:.:.:...:...  .::..  :   :: . .  :..... : . :
CCDS32 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KF0 ELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGD
        .. .:  :.:. .:  : .:. .. :..:. : ... .::::: . .:... ....:..
CCDS32 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE
              130       140       150       160       170       180

           180       190       200          210       220       230
pF1KF0 SMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQ---LNYLLTDEQIMEDLRTLNKLKSPK
        .    ...:: :.   ::   :::. ::. ..   . :.: : .:.::  :. :  .  
CCDS32 -LWNDELQSRKKRK---DPFS-PDKK-KPVVVSGPYIVYMLQDLDILEDWTTIRKAMATL
               190           200        210       220       230    

              240       250       260       270       280       290
pF1KF0 RPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVIS
        :   ..    :  :..   .   :: :.:.:::: .:: ..:.: ...::.   : ::.
CCDS32 GPHRVKTE---P--PVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVIT
          240            250       260       270       280         

              300       310       320        
pF1KF0 SVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRSAA
       ... .:.: ..  :..: ..:..:::.: . :.     
CCDS32 TINHDEVWFKRP-DGSKSKLYISQLQKGKYSIKHS   
     290       300        310       320      




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:05:05 2016 done: Fri Nov  4 20:05:05 2016
 Total Scan time:  3.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]