Result of FASTA (ccds) for
pF1KF0137
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KF0137, 1508 aa
1>>>pF1KF0137 1508 - 1508 aa - 1508 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1717+/-0.00105; mu= 14.8647+/- 0.062
mean_var=148.4281+/-31.093, 0's: 0 Z-trim(108.3): 87 B-trim: 0 in 0/50
Lambda= 0.105273
statistics sampled from 10026 (10104) to 10026 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.31), width: 16
Scan time: 4.690
The best scores are: opt bits E(32554)
CCDS4330.1 GEMIN5 gene_id:25929|Hs108|chr5 (1508) 10267 1572.7 0
>>CCDS4330.1 GEMIN5 gene_id:25929|Hs108|chr5 (1508 aa)
initn: 10267 init1: 10267 opt: 10267 Z-score: 8431.1 bits: 1572.7 E(32554): 0
Smith-Waterman score: 10267; 99.9% identity (100.0% similar) in 1508 aa overlap (1-1508:1-1508)
10 20 30 40 50 60
pF1KF0 MGQEPRTLPPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGQEPRTLPPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIGEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KF0 VGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KF0 VKDLIVSGDEKGVVFCYWFNRNDSQHLFIEPRTIFCLTCSPHHEDLVAIGYKDGIVVIID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VKDLIVSGDEKGVVFCYWFNRNDSQHLFIEPRTIFCLTCSPHHEDLVAIGYKDGIVVIID
130 140 150 160 170 180
190 200 210 220 230 240
pF1KF0 ISKKGEVIHRLRGHDDEIHSIAWCPLPGEDCLSINQEETSEEAEITNGNAVAQAPVTKGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ISKKGEVIHRLRGHDDEIHSIAWCPLPGEDCLSINQEETSEEAEITNGNAVAQAPVTKGC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KF0 YLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPTVKERLWLTLHWPSNQPTQLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPTVKERLWLTLHWPSNQPTQLV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KF0 SSCFGGELLQWDLTQSWRRKYTLFSASSEGQNHSRIVFNLCPLQTEDDKQLLLSTSMDRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSCFGGELLQWDLTQSWRRKYTLFSASSEGQNHSRIVFNLCPLQTEDDKQLLLSTSMDRD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KF0 VKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAIGVGDGMIRVWNTLSIKNNYDVKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAIGVGDGMIRVWNTLSIKNNYDVKN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KF0 FWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISSTYHKKTVYTLAWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISSTYHKKTVYTLAWGP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KF0 PVPPMSLGGEGDRPSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRDTNSIKYKLPVHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PVPPMSLGGEGDRPSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRDTNSIKYKLPVHT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KF0 EISWKADGKIMALGNEDGSIEIFQIPNLKLICTIQQHHKLVNTISWHHEHGSQPELSYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EISWKADGKIMALGNEDGSIEIFQIPNLKLICTIQQHHKLVNTISWHHEHGSQPELSYLM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KF0 ASGSNNAVIYVHNLKTVIESSPESPVTITEPYRTLSGHTAKITSVAWSPHHDGRLVSASY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASGSNNAVIYVHNLKTVIESSPESPVTITEPYRTLSGHTAKITSVAWSPHHDGRLVSASY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KF0 DGTAQVWDALREEPLCNFRGHQGRLLCVAWSPLDPDCIYSGADDFCVHKWLTSMQDHSRP
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS43 DGTAQVWDALREEPLCNFRGHRGRLLCVAWSPLDPDCIYSGADDFCVHKWLTSMQDHSRP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KF0 PQGKKSIELEKKRLSQPKAKPKKKKKPTLRTPVKLESIDGNEEESMKENSGPVENGVSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PQGKKSIELEKKRLSQPKAKPKKKKKPTLRTPVKLESIDGNEEESMKENSGPVENGVSDQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KF0 EGEEQAREPELPCGLAPAVSREPVICTPVSSGFEKSKVTINNKVILLKKEPPKEKPETLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EGEEQAREPELPCGLAPAVSREPVICTPVSSGFEKSKVTINNKVILLKKEPPKEKPETLI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KF0 KKRKARSLLPLSTSLDHRSKEELHQDCLVLATAKHSRELNEDVSADVEERFHLGLFTDRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KKRKARSLLPLSTSLDHRSKEELHQDCLVLATAKHSRELNEDVSADVEERFHLGLFTDRA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KF0 TLYRMIDIEGKGHLENGHPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPAAGYHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLYRMIDIEGKGHLENGHPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPAAGYHV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KF0 WLWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WLWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KF0 VLKDLYLSWGTVLERDGHYAVAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VLKDLYLSWGTVLERDGHYAVAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KF0 DELSASLALRCAQELLLANNWVGAQEALQLHESLQGQRLVFCLLELLSRHLEEKQLSEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DELSASLALRCAQELLLANNWVGAQEALQLHESLQGQRLVFCLLELLSRHLEEKQLSEGK
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KF0 SSSSYHTWNTGTEGPFVERVTAVWKSIFSLDTPEQYQEAFQKLQNIKYPSATNNTPAKQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSSSYHTWNTGTEGPFVERVTAVWKSIFSLDTPEQYQEAFQKLQNIKYPSATNNTPAKQL
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KF0 LLHICHDLTLAVLSQQMASWDEAVQALLRAVVRSYDSGSFTIMQEVYSAFLPDGCDHLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LLHICHDLTLAVLSQQMASWDEAVQALLRAVVRSYDSGSFTIMQEVYSAFLPDGCDHLRD
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KF0 KLGDHQSPATPAFKSLEAFFLYGRLYEFWWSLSRPCPNSSVWVRAGHRTLSVEPSQQLDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLGDHQSPATPAFKSLEAFFLYGRLYEFWWSLSRPCPNSSVWVRAGHRTLSVEPSQQLDT
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KF0 ASTEETDPETSQPEPNRPSELDLRLTEEGERMLSTFKELFSEKHASLQNSQRTVAEVQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASTEETDPETSQPEPNRPSELDLRLTEEGERMLSTFKELFSEKHASLQNSQRTVAEVQET
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KF0 LAEMIRQHQKSQLCKSTANGPDKNEPEVEAEQPLCSSQSQCKEEKNEPLSLPELTKRLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LAEMIRQHQKSQLCKSTANGPDKNEPEVEAEQPLCSSQSQCKEEKNEPLSLPELTKRLTE
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KF0 ANQRMAKFPESIKAWPFPDVLECCLVLLLIRSHFPGCLAQEMQQQAQELLQKYGNTKTYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ANQRMAKFPESIKAWPFPDVLECCLVLLLIRSHFPGCLAQEMQQQAQELLQKYGNTKTYR
1450 1460 1470 1480 1490 1500
pF1KF0 RHCQTFCM
::::::::
CCDS43 RHCQTFCM
1508 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:25:58 2016 done: Thu Nov 3 18:25:59 2016
Total Scan time: 4.690 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]