Result of FASTA (ccds) for
pF1KF0417
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KF0417, 539 aa
1>>>pF1KF0417 539 - 539 aa - 539 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8116+/-0.000858; mu= 6.2823+/- 0.052
mean_var=275.9677+/-56.106, 0's: 0 Z-trim(116.3): 51 B-trim: 120 in 1/52
Lambda= 0.077205
statistics sampled from 16913 (16962) to 16913 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.521), width: 16
Scan time: 4.230
The best scores are: opt bits E(32554)
CCDS59959.1 PLCH2 gene_id:9651|Hs108|chr1 (1416) 1434 173.2 1.8e-42
CCDS33881.1 PLCH1 gene_id:23007|Hs108|chr3 (1655) 774 99.8 2.7e-20
CCDS46940.1 PLCH1 gene_id:23007|Hs108|chr3 (1002) 618 82.2 3.2e-15
CCDS46939.1 PLCH1 gene_id:23007|Hs108|chr3 (1693) 618 82.4 4.6e-15
>>CCDS59959.1 PLCH2 gene_id:9651|Hs108|chr1 (1416 aa)
initn: 1434 init1: 1395 opt: 1434 Z-score: 876.0 bits: 173.2 E(32554): 1.8e-42
Smith-Waterman score: 1463; 54.9% identity (65.8% similar) in 506 aa overlap (79-527:753-1240)
50 60 70 80 90 100
pF1KF0 GMQMVKLRGGSKGLVRFYYLDEHRSCIRWRPSRKNEKAKISIDSIQEVSEGRQSEVFQRY
:.. ... . : : :.. . :.: . .:
CCDS59 KFSANGGCGYVLKPGCMCQGVFNPNSEDPLPGQLKKQLVLRIISGQQLPKPRDSMLGDR-
730 740 750 760 770 780
110 120 130 140 150 160
pF1KF0 PDGSF-DPFVEVEIIGLPVDCSREQTRVVDDNGFNPTWEETLVFMVHMPEIALVRFLVWD
: . ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 --GEIIDPFVEVEIIGLPVDCSREQTRVVDDNGFNPTWEETLVFMVHMPEIALVRFLVWD
790 800 810 820 830
170 180 190 200 210 220
pF1KF0 HDPIGRDFIGQRTLAFSSMMPGYRHVYLEGMEEASIFVHVAVSDISGKVKQALGLKGLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HDPIGRDFIGQRTLAFSSMMPGYRHVYLEGMEEASIFVHVAVSDISGKVKQALGLKGLFL
840 850 860 870 880 890
230 240 250 260 270 280
pF1KF0 RGPKPGSLDSHAAGRPPARPSVSQRILRRTASAPTKSQKPGRRGFPELVLGTRDTGSKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RGPKPGSLDSHAAGRPPARPSVSQRILRRTASAPTKSQKPGRRGFPELVLGTRDTGSKGV
900 910 920 930 940 950
290 300 310 320 330
pF1KF0 ADDVVPPGPGPAPEAPAQEGPGSGSPRGKAPAAVAEKSPVRVRPLRVLD--------GPG
::::::::::::::::::::::::::: : .. . : :: :. :::
CCDS59 ADDVVPPGPGPAPEAPAQEGPGSGSPRDTRPLSTQRPLP----PLCSLETIAEEPAPGPG
960 970 980 990 1000 1010
340 350 360 370
pF1KF0 PAGMAATCMKCV-------VGSCAGVNTGGLQRERP----PSP-------GPASR----Q
: ::. . .: :.: . . :.: : : : : :
CCDS59 PPPPAAVPTSSSQGRPPYPTGPGANVASPLEDTEEPRDSRPRPCNGEGAGGAYERAPGSQ
1020 1030 1040 1050 1060 1070
380 390 400 410 420
pF1KF0 AAIRQQPRA--------RADSLGA----PCCGLDPHAIP----GRSREAPKGPGAW-RQG
. :.:::. :. : : : : : : : . .: . : :
CCDS59 TDGRSQPRTLGHLPVIRRVKSEGQVPTEPLGGWRPLAAPFPAPAVYSDATGSDPLWQRLE
1080 1090 1100 1110 1120 1130
430 440 450 460 470
pF1KF0 P-GGSGSMSSDSSSPDSPGIPERS-PRWPEGACRQ--PGALQGEMSALFAQKLEEIRSKS
: : :.::.:: .: . . : : : :. :: .:.. : .:
CCDS59 PCGHRDSVSSSSSMSSSDTVIDLSLPSLGLGRSRENLAGAHMGRLPP---------RPHS
1140 1150 1160 1170 1180
480 490 500 510 520 530
pF1KF0 PMFSAGKPLLPCVVLPHA-PGMAGPGS----PAAASAWTVSPRVLVLVALYPWHCLRGTL
::..: :: :. .. :.. . :. : . ...::. : :: ::
CCDS59 A--SAARPDLPPVTKSKSNPNLRATGQRPPIPDELQPRSLAPRMAGLPFRPPWGCLSLVG
1190 1200 1210 1220 1230 1240
pF1KF0 LPWLACGP
CCDS59 VQDCPVAAKSKSLGDLTADDFAPSFEGGSRRLSHSLGLPGGTRRVSGPGVRRDTLTEQLR
1250 1260 1270 1280 1290 1300
>--
initn: 603 init1: 543 opt: 543 Z-score: 339.7 bits: 74.0 E(32554): 1.3e-12
Smith-Waterman score: 544; 73.9% identity (82.6% similar) in 115 aa overlap (20-115:4-118)
10 20 30 40
pF1KF0 MMAPPTAGPLPGPALPPEDPGPDPESR------WL-----FLSANIL--------PVVER
: :.:.:: :: ....... :.:::
CCDS59 MSGPWPSPDSRTKGTVAWLAEVLLWVGGSVVLSSEWQLGPLVER
10 20 30 40
50 60 70 80 90 100
pF1KF0 CMGAMQEGMQMVKLRGGSKGLVRFYYLDEHRSCIRWRPSRKNEKAKISIDSIQEVSEGRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CMGAMQEGMQMVKLRGGSKGLVRFYYLDEHRSCIRWRPSRKNEKAKISIDSIQEVSEGRQ
50 60 70 80 90 100
110 120 130 140 150 160
pF1KF0 SEVFQRYPDGSFDPFVEVEIIGLPVDCSREQTRVVDDNGFNPTWEETLVFMVHMPEIALV
::::::::::::::
CCDS59 SEVFQRYPDGSFDPNCCFSIYHGSHRESLDLVSTSSEVARTWVTGLRYLMAGISDEDSLA
110 120 130 140 150 160
>>CCDS33881.1 PLCH1 gene_id:23007|Hs108|chr3 (1655 aa)
initn: 762 init1: 673 opt: 774 Z-score: 477.9 bits: 99.8 E(32554): 2.7e-20
Smith-Waterman score: 774; 58.8% identity (79.9% similar) in 204 aa overlap (93-289:717-914)
70 80 90 100 110
pF1KF0 VRFYYLDEHRSCIRWRPSRKNEKAKISIDSIQEVSEGRQSEVFQRYPDGSF-------DP
: .: :.: . . ::. : ::
CCDS33 GYVLKPQQMCKGTFNPFSGDPLPANPKKQLILKVISGQQ---LPKPPDSMFGDRGEIIDP
690 700 710 720 730 740
120 130 140 150 160 170
pF1KF0 FVEVEIIGLPVDCSREQTRVVDDNGFNPTWEETLVFMVHMPEIALVRFLVWDHDPIGRDF
::::::::::::: ..::::::::::::.:::::.: :::::::::::::::::::::::
CCDS33 FVEVEIIGLPVDCCKDQTRVVDDNGFNPVWEETLTFTVHMPEIALVRFLVWDHDPIGRDF
750 760 770 780 790 800
180 190 200 210 220 230
pF1KF0 IGQRTLAFSSMMPGYRHVYLEGMEEASIFVHVAVSDISGKVKQALGLKGLFLRGPKPGSL
.::::..:::..::::::::::. :::::::.....: :: .: :::::: ..:. .:
CCDS33 VGQRTVTFSSLVPGYRHVYLEGLTEASIFVHITINEIYGKNRQLQGLKGLFNKNPRHSS-
810 820 830 840 850 860
240 250 260 270 280 290
pF1KF0 DSHAAGRPPARPSVSQRILRRTASAPTKSQKPGRRGFPELVLGTRDTGSKGVADDVVPPG
:. .. . :...::::::::::.:..: .. :: :.: .:. :... :
CCDS33 -SENNSHYVRKRSIGDRILRRTASAPAKGRKKSKMGFQEMVE-IKDSVSEATRDQDGVLR
870 880 890 900 910 920
300 310 320 330 340 350
pF1KF0 PGPAPEAPAQEGPGSGSPRGKAPAAVAEKSPVRVRPLRVLDGPGPAGMAATCMKCVVGSC
CCDS33 RTTRSLQARPVSMPVDRNLLGALSLPVSETAKDIEGKENSLAEDKDGRRKGKASIKDPHF
930 940 950 960 970 980
>>CCDS46940.1 PLCH1 gene_id:23007|Hs108|chr3 (1002 aa)
initn: 745 init1: 613 opt: 618 Z-score: 386.7 bits: 82.2 E(32554): 3.2e-15
Smith-Waterman score: 724; 53.6% identity (72.8% similar) in 224 aa overlap (93-289:735-952)
70 80 90 100 110
pF1KF0 VRFYYLDEHRSCIRWRPSRKNEKAKISIDSIQEVSEGRQSEVFQRYPDGSF-------DP
: .: :.: . . ::. : ::
CCDS46 GYVLKPQQMCKGTFNPFSGDPLPANPKKQLILKVISGQQ---LPKPPDSMFGDRGEIIDP
710 720 730 740 750 760
120 130 140 150 160 170
pF1KF0 FVEVEIIGLPVDCSREQTRVVDDNGFNPTWEETLVFMVHMPEIALVRFLVWDHDPIGRDF
::::::::::::: ..::::::::::::.:::::.: :::::::::::::::::::::::
CCDS46 FVEVEIIGLPVDCCKDQTRVVDDNGFNPVWEETLTFTVHMPEIALVRFLVWDHDPIGRDF
770 780 790 800 810 820
180 190 200 210
pF1KF0 IGQRTLAFSSMMPGYRHVYLEGMEEASIFVHVAVSDISGKV-------------------
.::::..:::..::::::::::. :::::::.....: ::
CCDS46 VGQRTVTFSSLVPGYRHVYLEGLTEASIFVHITINEIYGKWSPLILNPSYTILHFLGATK
830 840 850 860 870 880
220 230 240 250 260 270
pF1KF0 -KQALGLKGLFLRGPKPGSLDSHAAGRPPARPSVSQRILRRTASAPTKSQKPGRRGFPEL
.: :::::: ..:. .: :. .. . :...::::::::::.:..: .. :: :.
CCDS46 NRQLQGLKGLFNKNPRHSS--SENNSHYVRKRSIGDRILRRTASAPAKGRKKSKMGFQEM
890 900 910 920 930
280 290 300 310 320 330
pF1KF0 VLGTRDTGSKGVADDVVPPGPGPAPEAPAQEGPGSGSPRGKAPAAVAEKSPVRVRPLRVL
: .:. :... :
CCDS46 VE-IKDSVSEATRDQDGVLRRTTRSLQARPVSMPVDRNLLGALSLPVSETAKDIEGKENS
940 950 960 970 980 990
>>CCDS46939.1 PLCH1 gene_id:23007|Hs108|chr3 (1693 aa)
initn: 745 init1: 613 opt: 618 Z-score: 383.9 bits: 82.4 E(32554): 4.6e-15
Smith-Waterman score: 724; 53.6% identity (72.8% similar) in 224 aa overlap (93-289:735-952)
70 80 90 100 110
pF1KF0 VRFYYLDEHRSCIRWRPSRKNEKAKISIDSIQEVSEGRQSEVFQRYPDGSF-------DP
: .: :.: . . ::. : ::
CCDS46 GYVLKPQQMCKGTFNPFSGDPLPANPKKQLILKVISGQQ---LPKPPDSMFGDRGEIIDP
710 720 730 740 750 760
120 130 140 150 160 170
pF1KF0 FVEVEIIGLPVDCSREQTRVVDDNGFNPTWEETLVFMVHMPEIALVRFLVWDHDPIGRDF
::::::::::::: ..::::::::::::.:::::.: :::::::::::::::::::::::
CCDS46 FVEVEIIGLPVDCCKDQTRVVDDNGFNPVWEETLTFTVHMPEIALVRFLVWDHDPIGRDF
770 780 790 800 810 820
180 190 200 210
pF1KF0 IGQRTLAFSSMMPGYRHVYLEGMEEASIFVHVAVSDISGKV-------------------
.::::..:::..::::::::::. :::::::.....: ::
CCDS46 VGQRTVTFSSLVPGYRHVYLEGLTEASIFVHITINEIYGKWSPLILNPSYTILHFLGATK
830 840 850 860 870 880
220 230 240 250 260 270
pF1KF0 -KQALGLKGLFLRGPKPGSLDSHAAGRPPARPSVSQRILRRTASAPTKSQKPGRRGFPEL
.: :::::: ..:. .: :. .. . :...::::::::::.:..: .. :: :.
CCDS46 NRQLQGLKGLFNKNPRHSS--SENNSHYVRKRSIGDRILRRTASAPAKGRKKSKMGFQEM
890 900 910 920 930
280 290 300 310 320 330
pF1KF0 VLGTRDTGSKGVADDVVPPGPGPAPEAPAQEGPGSGSPRGKAPAAVAEKSPVRVRPLRVL
: .:. :... :
CCDS46 VE-IKDSVSEATRDQDGVLRRTTRSLQARPVSMPVDRNLLGALSLPVSETAKDIEGKENS
940 950 960 970 980 990
539 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:37:42 2016 done: Sat Nov 5 06:37:43 2016
Total Scan time: 4.230 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]