FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0007, 677 aa
  1>>>pF1KSDA0007 677 - 677 aa - 677 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9703+/-0.00117; mu= 3.5540+/- 0.070
 mean_var=272.9605+/-54.863, 0's: 0 Z-trim(110.5): 43  B-trim: 0 in 0/53
 Lambda= 0.077629
 statistics sampled from 11657 (11672) to 11657 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.359), width:  16
 Scan time:  4.160

The best scores are:                                      opt bits E(32554)
CCDS46251.1 WDR43 gene_id:23160|Hs108|chr2         ( 677) 4525 521.0 2.2e-147


>>CCDS46251.1 WDR43 gene_id:23160|Hs108|chr2              (677 aa)
 initn: 4525 init1: 4525 opt: 4525  Z-score: 2759.3  bits: 521.0 E(32554): 2.2e-147
Smith-Waterman score: 4525; 100.0% identity (100.0% similar) in 677 aa overlap (1-677:1-677)

               10        20        30        40        50        60
pF1KSD MAAGGGGSCDPLAPAGVPCAFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAAGGGGSCDPLAPAGVPCAFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TCTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TCTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD HILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSLLLVYGSWFQPTIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSLLLVYGSWFQPTIE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RVALNSREPHMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RVALNSREPHMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD QTEQVESKRKSGGNEVSIEERLGAMDIDTHKKGKEDLQTNSFPVLLTQGLESNDFEMLNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QTEQVESKRKSGGNEVSIEERLGAMDIDTHKKGKEDLQTNSFPVLLTQGLESNDFEMLNK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VLQTRNVNLIKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VLQTRNVNLIKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLST
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD LPDLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLITQVTASEKTKGATSPGQKAKLVYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LPDLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLITQVTASEKTKGATSPGQKAKLVYE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD EESSEEESDDEIADKDSEDNWDEDEEESESEKDEDVEEEDEDAEGKDEENGEDRDTASEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EESSEEESDDEIADKDSEDNWDEDEEESESEKDEDVEEEDEDAEGKDEENGEDRDTASEK
              610       620       630       640       650       660

              670       
pF1KSD ELNGDSDLDPENESEEE
       :::::::::::::::::
CCDS46 ELNGDSDLDPENESEEE
              670       




677 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:18:05 2016 done: Wed Nov  2 23:18:06 2016
 Total Scan time:  4.160 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]