FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0016, 145 aa
  1>>>pF1KSDA0016 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2970+/-0.000257; mu= 12.9362+/- 0.016
 mean_var=78.3552+/-15.913, 0's: 0 Z-trim(121.1): 1  B-trim: 0 in 0/55
 Lambda= 0.144891
 statistics sampled from 37308 (37309) to 37308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.437), width:  16
 Scan time:  5.730

The best scores are:                                      opt bits E(85289)
NP_055580 (OMIM: 601848) mitochondrial import rece ( 145)  944 205.5 2.5e-53


>>NP_055580 (OMIM: 601848) mitochondrial import receptor  (145 aa)
 initn: 944 init1: 944 opt: 944  Z-score: 1078.5  bits: 205.5 E(85289): 2.5e-53
Smith-Waterman score: 944; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KSD MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQ
               70        80        90       100       110       120

              130       140     
pF1KSD MLLTKLPTISQRIVSAQSLAEDDVE
       :::::::::::::::::::::::::
NP_055 MLLTKLPTISQRIVSAQSLAEDDVE
              130       140     




145 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:19:33 2016 done: Wed Nov  2 23:19:34 2016
 Total Scan time:  5.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]