FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0020, 508 aa
  1>>>pF1KSDA0020 508 - 508 aa - 508 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3454+/-0.00113; mu= 12.6966+/- 0.068
 mean_var=74.2248+/-14.480, 0's: 0 Z-trim(102.5): 32  B-trim: 4 in 1/48
 Lambda= 0.148867
 statistics sampled from 6946 (6957) to 6946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.214), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS6448.2 PUM3 gene_id:9933|Hs108|chr9            ( 648) 3257 709.3 3.1e-204


>>CCDS6448.2 PUM3 gene_id:9933|Hs108|chr9                 (648 aa)
 initn: 3257 init1: 3257 opt: 3257  Z-score: 3780.1  bits: 709.3 E(32554): 3.1e-204
Smith-Waterman score: 3257; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:141-648)

                                             10        20        30
pF1KSD                               MWEILRRKDCDKEKRVKLMSDLQKLIQGKI
                                     ::::::::::::::::::::::::::::::
CCDS64 DDFKKKKKELKQSRQLSDKTNYDIVVRAKQMWEILRRKDCDKEKRVKLMSDLQKLIQGKI
              120       130       140       150       160       170

               40        50        60        70        80        90
pF1KSD KTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQ
              180       190       200       210       220       230

              100       110       120       130       140       150
pF1KSD IAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRT
              240       250       260       270       280       290

              160       170       180       190       200       210
pF1KSD LDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEA
              300       310       320       330       340       350

              220       230       240       250       260       270
pF1KSD IREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDC
              360       370       380       390       400       410

              280       290       300       310       320       330
pF1KSD IDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAH
              420       430       440       450       460       470

              340       350       360       370       380       390
pF1KSD SKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIA
              480       490       500       510       520       530

              400       410       420       430       440       450
pF1KSD SLAATGLHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SLAATGLHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNL
              540       550       560       570       580       590

              460       470       480       490       500        
pF1KSD KSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKLST
              600       610       620       630       640        




508 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:22:20 2016 done: Wed Nov  2 23:22:20 2016
 Total Scan time:  2.430 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]