FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0020, 508 aa
  1>>>pF1KSDA0020 508 - 508 aa - 508 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6059+/-0.000503; mu= 11.4128+/- 0.031
 mean_var=87.4482+/-17.662, 0's: 0 Z-trim(109.3): 40  B-trim: 15 in 1/47
 Lambda= 0.137151
 statistics sampled from 17465 (17498) to 17465 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.205), width:  16
 Scan time:  7.350

The best scores are:                                      opt bits E(85289)
NP_055693 (OMIM: 609960) pumilio homolog 3 [Homo s ( 648) 3257 655.2 1.7e-187


>>NP_055693 (OMIM: 609960) pumilio homolog 3 [Homo sapie  (648 aa)
 initn: 3257 init1: 3257 opt: 3257  Z-score: 3487.3  bits: 655.2 E(85289): 1.7e-187
Smith-Waterman score: 3257; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:141-648)

                                             10        20        30
pF1KSD                               MWEILRRKDCDKEKRVKLMSDLQKLIQGKI
                                     ::::::::::::::::::::::::::::::
NP_055 DDFKKKKKELKQSRQLSDKTNYDIVVRAKQMWEILRRKDCDKEKRVKLMSDLQKLIQGKI
              120       130       140       150       160       170

               40        50        60        70        80        90
pF1KSD KTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQ
              180       190       200       210       220       230

              100       110       120       130       140       150
pF1KSD IAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRT
              240       250       260       270       280       290

              160       170       180       190       200       210
pF1KSD LDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEA
              300       310       320       330       340       350

              220       230       240       250       260       270
pF1KSD IREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDC
              360       370       380       390       400       410

              280       290       300       310       320       330
pF1KSD IDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAH
              420       430       440       450       460       470

              340       350       360       370       380       390
pF1KSD SKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIA
              480       490       500       510       520       530

              400       410       420       430       440       450
pF1KSD SLAATGLHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SLAATGLHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNL
              540       550       560       570       580       590

              460       470       480       490       500        
pF1KSD KSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKLST
              600       610       620       630       640        




508 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:22:21 2016 done: Wed Nov  2 23:22:22 2016
 Total Scan time:  7.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]