Result of FASTA (omim) for
pF1KSDA0022
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0022, 232 aa
1>>>pF1KSDA0022 232 - 232 aa - 232 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6612+/-0.000373; mu= 17.6639+/- 0.023
mean_var=62.0194+/-12.738, 0's: 0 Z-trim(113.0): 108 B-trim: 968 in 1/55
Lambda= 0.162858
statistics sampled from 22020 (22135) to 22020 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.26), width: 16
Scan time: 6.260
The best scores are: opt bits E(85289)
NP_055695 (OMIM: 612246) CD302 antigen isoform 1 p ( 232) 1572 377.7 9e-105
NP_001185693 (OMIM: 612246) CD302 antigen isoform ( 195) 1179 285.3 4.9e-77
NP_001185692 (OMIM: 612246) CD302 antigen isoform ( 174) 660 163.3 2.3e-40
XP_016859091 (OMIM: 604939) PREDICTED: secretory p ( 776) 244 66.1 1.9e-10
XP_016859089 (OMIM: 604939) PREDICTED: secretory p ( 844) 244 66.2 2e-10
XP_011509122 (OMIM: 604939) PREDICTED: secretory p (1463) 244 66.3 3.1e-10
NP_031392 (OMIM: 604939) secretory phospholipase A (1463) 244 66.3 3.1e-10
XP_005246449 (OMIM: 604939) PREDICTED: secretory p (1463) 244 66.3 3.1e-10
XP_016859087 (OMIM: 604939) PREDICTED: secretory p (1463) 244 66.3 3.1e-10
NP_006030 (OMIM: 612264) C-type mannose receptor 2 (1479) 242 65.9 4.3e-10
NP_002340 (OMIM: 604524) lymphocyte antigen 75 pre (1722) 237 64.8 1.1e-09
NP_001182570 (OMIM: 604939) secretory phospholipas (1461) 236 64.5 1.1e-09
XP_016859088 (OMIM: 604939) PREDICTED: secretory p (1383) 224 61.6 7.7e-09
NP_987099 (OMIM: 606677) C-type lectin domain fami ( 182) 199 55.1 9.6e-08
NP_569708 (OMIM: 606677) C-type lectin domain fami ( 213) 199 55.1 1.1e-07
XP_011524043 (OMIM: 607621) PREDICTED: collectin-1 ( 725) 192 53.9 8.6e-07
NP_569057 (OMIM: 607621) collectin-12 [Homo sapien ( 742) 192 53.9 8.8e-07
NP_004377 (OMIM: 600826) neurocan core protein pre (1321) 168 48.5 6.8e-05
XP_011523845 (OMIM: 612264) PREDICTED: C-type mann (1156) 167 48.2 7.2e-05
NP_525126 (OMIM: 609964) C-type lectin domain fami ( 215) 159 45.7 7.4e-05
XP_011518934 (OMIM: 609964) PREDICTED: C-type lect ( 215) 159 45.7 7.4e-05
NP_001193948 (OMIM: 151445) low affinity immunoglo ( 320) 160 46.1 8.5e-05
XP_005272519 (OMIM: 151445) PREDICTED: low affinit ( 321) 160 46.1 8.5e-05
NP_001207429 (OMIM: 151445) low affinity immunoglo ( 321) 160 46.1 8.5e-05
NP_001993 (OMIM: 151445) low affinity immunoglobul ( 321) 160 46.1 8.5e-05
NP_072092 (OMIM: 606264,613108,614079) C-type lect ( 201) 155 44.7 0.00013
NP_997228 (OMIM: 612252) C-type lectin domain fami ( 241) 154 44.6 0.00018
NP_068767 (OMIM: 600347) brevican core protein iso ( 911) 158 46.0 0.00026
XP_011508168 (OMIM: 600347) PREDICTED: brevican co ( 911) 158 46.0 0.00026
XP_016857536 (OMIM: 600347) PREDICTED: brevican co ( 956) 158 46.0 0.00027
XP_016874429 (OMIM: 606677) PREDICTED: C-type lect ( 166) 147 42.8 0.00043
NP_922941 (OMIM: 606264,613108,614079) C-type lect ( 168) 147 42.8 0.00043
NP_002429 (OMIM: 153618) macrophage mannose recept (1456) 156 45.7 0.00051
NP_922938 (OMIM: 606264,613108,614079) C-type lect ( 247) 147 42.9 0.00058
NP_006498 (OMIM: 167771) lithostathine-1-beta prec ( 166) 144 42.1 0.0007
XP_011518916 (OMIM: 609962) PREDICTED: C-type lect ( 188) 141 41.4 0.0013
NP_055173 (OMIM: 609962) C-type lectin domain fami ( 219) 141 41.5 0.0014
NP_006335 (OMIM: 605999) C-type lectin domain fami ( 292) 137 40.6 0.0034
XP_011521916 (OMIM: 605999) PREDICTED: C-type lect ( 319) 137 40.7 0.0036
XP_011521915 (OMIM: 605999) PREDICTED: C-type lect ( 319) 137 40.7 0.0036
NP_001316999 (OMIM: 605999) C-type lectin domain f ( 289) 135 40.2 0.0046
NP_878910 (OMIM: 605999) C-type lectin domain fami ( 316) 135 40.2 0.0049
NP_001278751 (OMIM: 605029) killer cell lectin-lik ( 181) 130 38.8 0.0073
>>NP_055695 (OMIM: 612246) CD302 antigen isoform 1 precu (232 aa)
initn: 1572 init1: 1572 opt: 1572 Z-score: 2002.0 bits: 377.7 E(85289): 9e-105
Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)
10 20 30 40 50 60
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQCTDHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQCTDHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKWTDQDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKWTDQDD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DEDLVDTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKRKYLSDNHILISALVIASTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DEDLVDTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKRKYLSDNHILISALVIASTV
130 140 150 160 170 180
190 200 210 220 230
pF1KSD ILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEENEYPVQFD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEENEYPVQFD
190 200 210 220 230
>>NP_001185693 (OMIM: 612246) CD302 antigen isoform 3 pr (195 aa)
initn: 1292 init1: 1179 opt: 1179 Z-score: 1504.0 bits: 285.3 E(85289): 4.9e-77
Smith-Waterman score: 1222; 84.1% identity (84.1% similar) in 232 aa overlap (1-232:1-195)
10 20 30 40 50 60
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQCTDHG
:::::::::::::::::::::: :
NP_001 MLRAALPALLLPLLGLAAAAVA-------------------------------------G
10 20
70 80 90 100 110 120
pF1KSD ADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKWTDQDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKWTDQDD
30 40 50 60 70 80
130 140 150 160 170 180
pF1KSD DEDLVDTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKRKYLSDNHILISALVIASTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEDLVDTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKRKYLSDNHILISALVIASTV
90 100 110 120 130 140
190 200 210 220 230
pF1KSD ILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEENEYPVQFD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEENEYPVQFD
150 160 170 180 190
>>NP_001185692 (OMIM: 612246) CD302 antigen isoform 2 pr (174 aa)
initn: 660 init1: 660 opt: 660 Z-score: 845.6 bits: 163.3 E(85289): 2.3e-40
Smith-Waterman score: 1028; 74.6% identity (75.0% similar) in 232 aa overlap (1-232:1-174)
10 20 30 40 50 60
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQCTDHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQCTDHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKWTDQDD
::::::::::::::::::::::::::::::::::::::
NP_001 ADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTD----------------------
70 80 90
130 140 150 160 170 180
pF1KSD DEDLVDTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKRKYLSDNHILISALVIASTV
.:::::::::::::::::::::::
NP_001 ------------------------------------VPYKRKYLSDNHILISALVIASTV
100 110 120
190 200 210 220 230
pF1KSD ILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEENEYPVQFD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEENEYPVQFD
130 140 150 160 170
>>XP_016859091 (OMIM: 604939) PREDICTED: secretory phosp (776 aa)
initn: 179 init1: 134 opt: 244 Z-score: 308.5 bits: 66.1 E(85289): 1.9e-10
Smith-Waterman score: 244; 24.7% identity (58.6% similar) in 198 aa overlap (26-213:564-751)
10 20 30 40 50
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQ
: ::.:...:: : . .. :.: ...
XP_016 TACESFLQGAICHVPPETRQSEHPELCSETSIPWIKFKSNCYSF-STVLDSMSFEAAHEF
540 550 560 570 580 590
60 70 80 90 100 110
pF1KSD CTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKW
: .:.....:..: ::::.:. : .. . . :. .: .. ..::::.. ..:
XP_016 CKKEGSNLLTIKDEAENAFLLEELFAFGSSVQMVWLNAQFDGNNETIKWFDGTPTDQSNW
600 610 620 630 640 650
120 130 140 150 160
pF1KSD TDQDDDEDLVDT--CAFLHIKTGEWKKGNCEVSSVEGTLCKT--------AIPYKRKYLS
. : : :. :.: : :. . :. . .: .:: :.: : .
XP_016 GIRKPDTDYFKPHHCVALRIPEGLWQLSPCQEK--KGFICKMEADIHTAEALPEK----G
660 670 680 690 700
170 180 190 200 210 220
pF1KSD DNHILISALVIASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEEN
.: .: :. . ...... .. . .:: :. . : . .. ..::
XP_016 PSHSIIPLAVVLTLIVIVAICTLSFCIYK-HNGGFFRRL--AGFRNPYYPATNFSTVYLE
710 720 730 740 750 760
230
pF1KSD EYPVQFD
XP_016 ENILISDLEKSDQ
770
>>XP_016859089 (OMIM: 604939) PREDICTED: secretory phosp (844 aa)
initn: 179 init1: 134 opt: 244 Z-score: 308.0 bits: 66.2 E(85289): 2e-10
Smith-Waterman score: 244; 24.7% identity (58.6% similar) in 198 aa overlap (26-213:632-819)
10 20 30 40 50
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQ
: ::.:...:: : . .. :.: ...
XP_016 TACESFLQGAICHVPPETRQSEHPELCSETSIPWIKFKSNCYSF-STVLDSMSFEAAHEF
610 620 630 640 650 660
60 70 80 90 100 110
pF1KSD CTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKW
: .:.....:..: ::::.:. : .. . . :. .: .. ..::::.. ..:
XP_016 CKKEGSNLLTIKDEAENAFLLEELFAFGSSVQMVWLNAQFDGNNETIKWFDGTPTDQSNW
670 680 690 700 710 720
120 130 140 150 160
pF1KSD TDQDDDEDLVDT--CAFLHIKTGEWKKGNCEVSSVEGTLCKT--------AIPYKRKYLS
. : : :. :.: : :. . :. . .: .:: :.: : .
XP_016 GIRKPDTDYFKPHHCVALRIPEGLWQLSPCQEK--KGFICKMEADIHTAEALPEK----G
730 740 750 760 770
170 180 190 200 210 220
pF1KSD DNHILISALVIASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEEN
.: .: :. . ...... .. . .:: :. . : . .. ..::
XP_016 PSHSIIPLAVVLTLIVIVAICTLSFCIYK-HNGGFFRRL--AGFRNPYYPATNFSTVYLE
780 790 800 810 820 830
230
pF1KSD EYPVQFD
XP_016 ENILISDLEKSDQ
840
>>XP_011509122 (OMIM: 604939) PREDICTED: secretory phosp (1463 aa)
initn: 179 init1: 134 opt: 244 Z-score: 304.8 bits: 66.3 E(85289): 3.1e-10
Smith-Waterman score: 244; 24.7% identity (58.6% similar) in 198 aa overlap (26-213:1251-1438)
10 20 30 40 50
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQ
: ::.:...:: : . .. :.: ...
XP_011 TACESFLQGAICHVPPETRQSEHPELCSETSIPWIKFKSNCYSF-STVLDSMSFEAAHEF
1230 1240 1250 1260 1270
60 70 80 90 100 110
pF1KSD CTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKW
: .:.....:..: ::::.:. : .. . . :. .: .. ..::::.. ..:
XP_011 CKKEGSNLLTIKDEAENAFLLEELFAFGSSVQMVWLNAQFDGNNETIKWFDGTPTDQSNW
1280 1290 1300 1310 1320 1330
120 130 140 150 160
pF1KSD TDQDDDEDLVDT--CAFLHIKTGEWKKGNCEVSSVEGTLCKT--------AIPYKRKYLS
. : : :. :.: : :. . :. . .: .:: :.: : .
XP_011 GIRKPDTDYFKPHHCVALRIPEGLWQLSPCQEK--KGFICKMEADIHTAEALPEK----G
1340 1350 1360 1370 1380 1390
170 180 190 200 210 220
pF1KSD DNHILISALVIASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEEN
.: .: :. . ...... .. . .:: :. . : . .. ..::
XP_011 PSHSIIPLAVVLTLIVIVAICTLSFCIYK-HNGGFFRRL--AGFRNPYYPATNFSTVYLE
1400 1410 1420 1430 1440 1450
230
pF1KSD EYPVQFD
XP_011 ENILISDLEKSDQ
1460
>>NP_031392 (OMIM: 604939) secretory phospholipase A2 re (1463 aa)
initn: 179 init1: 134 opt: 244 Z-score: 304.8 bits: 66.3 E(85289): 3.1e-10
Smith-Waterman score: 244; 24.7% identity (58.6% similar) in 198 aa overlap (26-213:1251-1438)
10 20 30 40 50
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQ
: ::.:...:: : . .. :.: ...
NP_031 TACESFLQGAICHVPPETRQSEHPELCSETSIPWIKFKSNCYSF-STVLDSMSFEAAHEF
1230 1240 1250 1260 1270
60 70 80 90 100 110
pF1KSD CTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKW
: .:.....:..: ::::.:. : .. . . :. .: .. ..::::.. ..:
NP_031 CKKEGSNLLTIKDEAENAFLLEELFAFGSSVQMVWLNAQFDGNNETIKWFDGTPTDQSNW
1280 1290 1300 1310 1320 1330
120 130 140 150 160
pF1KSD TDQDDDEDLVDT--CAFLHIKTGEWKKGNCEVSSVEGTLCKT--------AIPYKRKYLS
. : : :. :.: : :. . :. . .: .:: :.: : .
NP_031 GIRKPDTDYFKPHHCVALRIPEGLWQLSPCQEK--KGFICKMEADIHTAEALPEK----G
1340 1350 1360 1370 1380 1390
170 180 190 200 210 220
pF1KSD DNHILISALVIASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEEN
.: .: :. . ...... .. . .:: :. . : . .. ..::
NP_031 PSHSIIPLAVVLTLIVIVAICTLSFCIYK-HNGGFFRRL--AGFRNPYYPATNFSTVYLE
1400 1410 1420 1430 1440 1450
230
pF1KSD EYPVQFD
NP_031 ENILISDLEKSDQ
1460
>>XP_005246449 (OMIM: 604939) PREDICTED: secretory phosp (1463 aa)
initn: 179 init1: 134 opt: 244 Z-score: 304.8 bits: 66.3 E(85289): 3.1e-10
Smith-Waterman score: 244; 24.7% identity (58.6% similar) in 198 aa overlap (26-213:1251-1438)
10 20 30 40 50
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQ
: ::.:...:: : . .. :.: ...
XP_005 TACESFLQGAICHVPPETRQSEHPELCSETSIPWIKFKSNCYSF-STVLDSMSFEAAHEF
1230 1240 1250 1260 1270
60 70 80 90 100 110
pF1KSD CTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKW
: .:.....:..: ::::.:. : .. . . :. .: .. ..::::.. ..:
XP_005 CKKEGSNLLTIKDEAENAFLLEELFAFGSSVQMVWLNAQFDGNNETIKWFDGTPTDQSNW
1280 1290 1300 1310 1320 1330
120 130 140 150 160
pF1KSD TDQDDDEDLVDT--CAFLHIKTGEWKKGNCEVSSVEGTLCKT--------AIPYKRKYLS
. : : :. :.: : :. . :. . .: .:: :.: : .
XP_005 GIRKPDTDYFKPHHCVALRIPEGLWQLSPCQEK--KGFICKMEADIHTAEALPEK----G
1340 1350 1360 1370 1380 1390
170 180 190 200 210 220
pF1KSD DNHILISALVIASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEEN
.: .: :. . ...... .. . .:: :. . : . .. ..::
XP_005 PSHSIIPLAVVLTLIVIVAICTLSFCIYK-HNGGFFRRL--AGFRNPYYPATNFSTVYLE
1400 1410 1420 1430 1440 1450
230
pF1KSD EYPVQFD
XP_005 ENILISDLEKSDQ
1460
>>XP_016859087 (OMIM: 604939) PREDICTED: secretory phosp (1463 aa)
initn: 179 init1: 134 opt: 244 Z-score: 304.8 bits: 66.3 E(85289): 3.1e-10
Smith-Waterman score: 244; 24.7% identity (58.6% similar) in 198 aa overlap (26-213:1251-1438)
10 20 30 40 50
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQ
: ::.:...:: : . .. :.: ...
XP_016 TACESFLQGAICHVPPETRQSEHPELCSETSIPWIKFKSNCYSF-STVLDSMSFEAAHEF
1230 1240 1250 1260 1270
60 70 80 90 100 110
pF1KSD CTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSNMTFDKW
: .:.....:..: ::::.:. : .. . . :. .: .. ..::::.. ..:
XP_016 CKKEGSNLLTIKDEAENAFLLEELFAFGSSVQMVWLNAQFDGNNETIKWFDGTPTDQSNW
1280 1290 1300 1310 1320 1330
120 130 140 150 160
pF1KSD TDQDDDEDLVDT--CAFLHIKTGEWKKGNCEVSSVEGTLCKT--------AIPYKRKYLS
. : : :. :.: : :. . :. . .: .:: :.: : .
XP_016 GIRKPDTDYFKPHHCVALRIPEGLWQLSPCQEK--KGFICKMEADIHTAEALPEK----G
1340 1350 1360 1370 1380 1390
170 180 190 200 210 220
pF1KSD DNHILISALVIASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEEN
.: .: :. . ...... .. . .:: :. . : . .. ..::
XP_016 PSHSIIPLAVVLTLIVIVAICTLSFCIYK-HNGGFFRRL--AGFRNPYYPATNFSTVYLE
1400 1410 1420 1430 1440 1450
230
pF1KSD EYPVQFD
XP_016 ENILISDLEKSDQ
1460
>>NP_006030 (OMIM: 612264) C-type mannose receptor 2 pre (1479 aa)
initn: 246 init1: 94 opt: 242 Z-score: 302.2 bits: 65.9 E(85289): 4.3e-10
Smith-Waterman score: 245; 24.2% identity (57.1% similar) in 219 aa overlap (24-226:1261-1476)
10 20 30 40
pF1KSD MLRAALPALLLPLLGLAAAAVADCPS----STWIQFQDSCYIFLQEAIKVESI
::. :.:: :.. :: : .: . .
NP_006 TTSCDTKLQGAVCGVSSGPPPPRRISYHGSCPQGLADSAWIPFREHCYSFHMELL--LGH
1240 1250 1260 1270 1280
50 60 70 80 90 100
pF1KSD EDVRNQCTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSN
...:..: :. ..:: .: ::.:. . :.. ::: .. ... : ::.
NP_006 KEARQRCQRAGGAVLSILDEMENVFVWEHLQSYEGQSRGAWLGMNFNPKGGTLVWQDNTA
1290 1300 1310 1320 1330 1340
110 120 130 140 150 160
pF1KSD MTFDKWTDQDDDEDLV--DTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKRKY----
.....: ... ..: ... ..: :. : : .. . :..:: . ..
NP_006 VNYSNWGPPGLGPSMLSHNSCYWIQSNSGLWRPGAC-TNITMGVVCKLPRAEQSSFSPSA
1350 1360 1370 1380 1390 1400
170 180 190 200 210
pF1KSD LSDNHILISALVIASTVILTVLGAIIWFLYKKHSDSR--FTTV-FSTAPQSPYN--EDCV
: .: . ....: ..:..: : . . ...: : : . .: . .:: . : .
NP_006 LPENPAALVVVLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEATEKNI
1410 1420 1430 1440 1450 1460
220 230
pF1KSD LVVGEE-NEYPVQFD
:: : ::
NP_006 LVSDMEMNEQQE
1470
>--
initn: 130 init1: 47 opt: 202 Z-score: 251.4 bits: 56.5 E(85289): 2.9e-07
Smith-Waterman score: 202; 26.1% identity (52.9% similar) in 157 aa overlap (18-168:376-519)
10 20 30 40
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVE
: . ..: : : :: :: . : .
NP_006 WQNRDCSIALPYVCKKKPNATAEPTPPDRWANVKVECEPS-WQPFQGHCYRLQAEK---R
350 360 370 380 390 400
50 60 70 80 90 100
pF1KSD SIEDVRNQCTDHGADMISIHNEEENAFILDTLKKQ----WKGPDDILLGMFYDTDDASFK
: .. .. : :.:..:::. : :: .:.. : : .:. : : .:.
NP_006 SWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDLKLQM-------NFE
410 420 430 440 450
110 120 130 140 150 160
pF1KSD WFDNSNMTFDKWT--DQDDDEDLVDTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKR
: :.: ..: .: . .. .: .. :. . :.:. . :. : ..:: : ..
NP_006 WSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGRWNDSPCNQSL--PSICKKAGQLSQ
460 470 480 490 500 510
170 180 190 200 210 220
pF1KSD KYLSDNHILISALVIASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVV
..:
NP_006 GAAEEDHGCRKGWTWHSPSCYWLGEDQVTYSEARRLCTDHGSQLVTITNRFEQAFVSSLI
520 530 540 550 560 570
>--
initn: 134 init1: 49 opt: 170 Z-score: 210.8 bits: 49.0 E(85289): 5.3e-05
Smith-Waterman score: 170; 25.7% identity (58.6% similar) in 140 aa overlap (15-146:226-354)
10 20 30 40
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWI--QFQDSCYIF-LQ
:. :: . : :. :::: : .:
NP_006 QWFHGCTSTGREDGHLWCATTQDYGKDERWGFCPIKSNDCET-FWDKDQLTDSCYQFNFQ
200 210 220 230 240 250
50 60 70 80 90
pF1KSD EAIKVESIEDVRNQCTDHGADMISIHNEEENAFILDTL----KKQWKGPDDILLGMFYDT
.. : ... .: ..:::..:: . .:...: : . : : .:. ::
NP_006 STL---SWREAWASCEQQGADLLSITEIHEQTYINGLLTGYSSTLWIGLNDL------DT
260 270 280 290 300
100 110 120 130 140 150
pF1KSD DDASFKWFDNSNMTFDKWTDQDDDEDLVDTCAFLHIKT-GEWKKGNCEVSSVEGTLCKTA
. ....: ::: . . .: ... :. ..:. .. .. : :.. .: ..
NP_006 S-GGWQWSDNSPLKYLNWESDQPDNPSEENCGVIRTESSGGWQNRDCSIALPYVCKKKPN
310 320 330 340 350 360
160 170 180 190 200 210
pF1KSD IPYKRKYLSDNHILISALVIASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNED
NP_006 ATAEPTPPDRWANVKVECEPSWQPFQGHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMA
370 380 390 400 410 420
>--
initn: 166 init1: 84 opt: 167 Z-score: 206.9 bits: 48.3 E(85289): 8.7e-05
Smith-Waterman score: 167; 24.2% identity (58.3% similar) in 132 aa overlap (29-157:525-648)
10 20 30 40 50
pF1KSD MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQCTD
: . ::: . .. . . ..: :::
NP_006 PCNQSLPSICKKAGQLSQGAAEEDHGCRKGWTWHSPSCYWLGEDQV---TYSEARRLCTD
500 510 520 530 540 550
60 70 80 90 100 110
pF1KSD HGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDA-SFKWFDNSNMTFDKWTD
::.....: :. :.::. ..: .:.: . . . : ... :: :...... . .: .
NP_006 HGSQLVTITNRFEQAFV-SSLIYNWEG--EYFWTALQDLNSTGSFFWLSGDEVMYTHW-N
560 570 580 590 600
120 130 140 150 160 170
pF1KSD QDDDEDLVDTCAFLHIKT--GEWKKGNCEVSSVEGTLCKTAIPYKRKYLSDNHILISALV
.:. :. : . : :. :: .: .:. ..
NP_006 RDQPGYSRGGCVALATGSAMGLWEVKNC-TSFRARYICRQSLGTPVTPELPGPDPTPSLT
610 620 630 640 650 660
180 190 200 210 220 230
pF1KSD IASTVILTVLGAIIWFLYKKHSDSRFTTVFSTAPQSPYNEDCVLVVGEENEYPVQFD
NP_006 GSCPQGWASDTKLRYCYKVFSSERLQDKKSWVQAQGACQELGAQLLSLASYEEEHFVANM
670 680 690 700 710 720
232 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:23:34 2016 done: Wed Nov 2 23:23:36 2016
Total Scan time: 6.260 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]