Result of FASTA (ccds) for
pF1KSDA0023
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0023, 2093 aa
1>>>pF1KSDA0023 2093 - 2093 aa - 2093 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.5450+/-0.00137; mu= -22.2230+/- 0.082
mean_var=557.4245+/-116.721, 0's: 0 Z-trim(113.4): 76 B-trim: 0 in 0/52
Lambda= 0.054323
statistics sampled from 13990 (14041) to 13990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.431), width: 16
Scan time: 5.410
The best scores are: opt bits E(32554)
CCDS6940.1 NUP214 gene_id:8021|Hs108|chr9 (2090) 5917 480.3 3.8e-134
CCDS83429.1 NUP214 gene_id:8021|Hs108|chr9 (2080) 5887 477.9 1.9e-133
CCDS83430.1 NUP214 gene_id:8021|Hs108|chr9 ( 916) 5306 432.2 4.9e-120
>>CCDS6940.1 NUP214 gene_id:8021|Hs108|chr9 (2090 aa)
initn: 9592 init1: 5595 opt: 5917 Z-score: 2521.8 bits: 480.3 E(32554): 3.8e-134
Smith-Waterman score: 12879; 97.5% identity (98.0% similar) in 2062 aa overlap (1-2041:1-2061)
10 20 30 40 50 60
pF1KSD MGDEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MGDEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNPGVKSLIKTPERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNPGVKSLIKTPERL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SLEGERQPKSPGSTPTTPTSSQAPQKLDASAAAAPASLPPSSPAAPIATFSLLPAGGAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SLEGERQPKSPGSTPTTPTSSQAPQKLDASAAAAPASLPPSSPAAPIATFSLLPAGGAPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD VFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAPTPAASPVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAPTPAASPVA
490 500 510 520 530 540
550 560 570 580
pF1KSD PSAASFSFGSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSE-----------
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PSAASFSFGSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSEKFTAAATSTPV
550 560 570 580 590 600
590 600 610 620 630 640
pF1KSD NSSQSAPPMSPFSSASKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQGSSSPVP
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSSQSAPPMSPFSSASKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQGSSSPVP
610 620 630 640 650 660
650 660 670 680 690 700
pF1KSD SMVQKSPRITPPAAKPGSPQAKSLQPAVAEKQGHQWKDSDPVMAGIGEEIAHFQKELEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SMVQKSPRITPPAAKPGSPQAKSLQPAVAEKQGHQWKDSDPVMAGIGEEIAHFQKELEEL
670 680 690 700 710 720
710 720 730 740 750 760
pF1KSD KARTSKACFQVGTSEEMKMLRTESDDLHTFLLEIKETTESLHGDISSLKTTLLEGFAGVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KARTSKACFQVGTSEEMKMLRTESDDLHTFLLEIKETTESLHGDISSLKTTLLEGFAGVE
730 740 750 760 770 780
770 780 790 800 810 820
pF1KSD EAREQNERNRDSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EAREQNERNRDSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHL
790 800 810 820 830 840
830 840 850 860 870 880
pF1KSD EQKKKQRHLLVPERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EQKKKQRHLLVPERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAV
850 860 870 880 890 900
890 900 910 920 930 940
pF1KSD PSQSSIHSFDSDLESLCNALLKTTIESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PSQSSIHSFDSDLESLCNALLKTTIESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVR
910 920 930 940 950 960
950 960 970 980 990 1000
pF1KSD STAPASLSRSAFLSQRYYEDLDEVSSTSSVSQSLESEDARTSCKDDEAVVQAPRHAPVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 STAPASLSRSAFLSQRYYEDLDEVSSTSSVSQSLESEDARTSCKDDEAVVQAPRHAPVVR
970 980 990 1000 1010 1020
1010 1020 1030 1040 1050 1060
pF1KSD TPSIQPSLLPHAAPFAKSHLVHGSSPGVMGTSVATSASKIIPQGADSTMLATKTVKHGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TPSIQPSLLPHAAPFAKSHLVHGSSPGVMGTSVATSASKIIPQGADSTMLATKTVKHGAP
1030 1040 1050 1060 1070 1080
1070 1080 1090 1100 1110 1120
pF1KSD SPSHPISAPQAAAAAALRRQMASQAPAVNTLTESTLKNVPQVVNVQELKNNPATPSTA--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SPSHPISAPQAAAAAALRRQMASQAPAVNTLTESTLKNVPQVVNVQELKNNPATPSTAMG
1090 1100 1110 1120 1130 1140
1130 1140 1150 1160 1170
pF1KSD --------KTPHPVLTPVAANQAKQGSLINSLKPSGPTPASGQLSSGDKASGTAKIETAV
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSVPYSTAKTPHPVLTPVAANQAKQGSLINSLKPSGPTPASGQLSSGDKASGTAKIETAV
1150 1160 1170 1180 1190 1200
1180 1190 1200 1210 1220 1230
pF1KSD TSTPSASGQFSKPFSFSPSGTGFNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TSTPSASGQFSKPFSFSPSGTGFNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGG
1210 1220 1230 1240 1250 1260
1240 1250 1260 1270 1280 1290
pF1KSD SKPSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SKPSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGEL
1270 1280 1290 1300 1310 1320
1300 1310 1320 1330 1340 1350
pF1KSD LFPSSLAGETLGSFSGLRVGQADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LFPSSLAGETLGSFSGLRVGQADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVL
1330 1340 1350 1360 1370 1380
1360 1370 1380 1390 1400 1410
pF1KSD GKHTEPPVTSSATTTSVAPPAATSTSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GKHTEPPVTSSATTTSVAPPAATSTSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFS
1390 1400 1410 1420 1430 1440
1420 1430 1440 1450 1460 1470
pF1KSD FGSQQTNSTVPPSAPPPTTAATPLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 FGSQQTNSTVPPSAPPPTTAATPLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSA
1450 1460 1470 1480 1490 1500
1480 1490 1500 1510 1520 1530
pF1KSD LPEKPGDSEVSASAASLLEEQQSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LPEKPGDSEVSASAASLLEEQQSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSL
1510 1520 1530 1540 1550 1560
1540 1550 1560 1570 1580 1590
pF1KSD VALSAEATPATTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VALSAEATPATTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASST
1570 1580 1590 1600 1610 1620
1600 1610 1620 1630 1640 1650
pF1KSD TSIVAPGPSAEAAAFGTVTSGSSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TSIVAPGPSAEAAAFGTVTSGSSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAAS
1630 1640 1650 1660 1670 1680
1660 1670 1680 1690 1700 1710
pF1KSD TAPSLFGQQTGSTASTAAATPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TAPSLFGQQTGSTASTAAATPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAA
1690 1700 1710 1720 1730 1740
1720 1730 1740 1750 1760 1770
pF1KSD SVFSFSQPGFSSVPAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SVFSFSQPGFSSVPAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQ
1750 1760 1770 1780 1790 1800
1780 1790 1800 1810 1820 1830
pF1KSD SNAPAFGQSPGFGQGGSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SNAPAFGQSPGFGQGGSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGI
1810 1820 1830 1840 1850 1860
1840 1850 1860 1870 1880 1890
pF1KSD VFGQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VFGQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSN
1870 1880 1890 1900 1910 1920
1900 1910 1920 1930 1940 1950
pF1KSD LFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPP
1930 1940 1950 1960 1970 1980
1960 1970 1980 1990 2000 2010
pF1KSD TFGGSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGSLAMSLSPTLKGRLL
::::::::::::::::::::::::::::::::::::::::::::: .. : . : : :
CCDS69 TFGGSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFG-FGSSSNTTSFGTLA
1990 2000 2010 2020 2030
2020 2030 2040 2050 2060 2070
pF1KSD LMRPKAGGGREQAAPGRKSNESRSLGHLCMERALTSPLKVWEQQQHHILRHARESECPHF
. . :. : . : .. :
CCDS69 SQNAPTFGSLSQQTSGFGTQSSGFSGFGSGTGGFSFGSNNSSVQGFGGWRS
2040 2050 2060 2070 2080 2090
>>CCDS83429.1 NUP214 gene_id:8021|Hs108|chr9 (2080 aa)
initn: 9858 init1: 5595 opt: 5887 Z-score: 2509.1 bits: 477.9 E(32554): 1.9e-133
Smith-Waterman score: 12905; 98.1% identity (98.5% similar) in 2052 aa overlap (1-2041:1-2051)
10 20 30 40 50 60
pF1KSD MGDEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MGDEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 RQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNPGVKSLIKTPERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNPGVKSLIKTPERL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD SLEGERQPKSPGSTPTTPTSSQAPQKLDASAAAAPASLPPSSPAAPIATFSLLPAGGAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SLEGERQPKSPGSTPTTPTSSQAPQKLDASAAAAPASLPPSSPAAPIATFSLLPAGGAPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD VFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAPTPAASPVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAPTPAASPVA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PSAASFSFGSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSENSSQSAPPMSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PSAASFSFGSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSENSSQSAPPMSP
550 560 570 580 590 600
610 620 630 640 650
pF1KSD FSSASKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPS-GRSAQGSSSPVPSMVQKSPRIT
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS83 FSSASKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPSAGRSAQGSSSPVPSMVQKSPRIT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD PPAAKPGSPQAKSLQPAVAEKQGHQWKDSDPVMAGIGEEIAHFQKELEELKARTSKACFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PPAAKPGSPQAKSLQPAVAEKQGHQWKDSDPVMAGIGEEIAHFQKELEELKARTSKACFQ
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD VGTSEEMKMLRTESDDLHTFLLEIKETTESLHGDISSLKTTLLEGFAGVEEAREQNERNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VGTSEEMKMLRTESDDLHTFLLEIKETTESLHGDISSLKTTLLEGFAGVEEAREQNERNR
730 740 750 760 770 780
780 790 800 810 820 830
pF1KSD DSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHLEQKKKQRHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHLEQKKKQRHLL
790 800 810 820 830 840
840 850 860 870 880 890
pF1KSD VPERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAVPSQSSIHSFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VPERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAVPSQSSIHSFD
850 860 870 880 890 900
900 910 920 930 940 950
pF1KSD SDLESLCNALLKTTIESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVRSTAPASLSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SDLESLCNALLKTTIESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVRSTAPASLSRS
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KSD AFLSQRYYEDLDEVSSTSSVSQSLESEDARTSCKDDEAVVQAPRHAPVVRTPSIQPSLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AFLSQRYYEDLDEVSSTSSVSQSLESEDARTSCKDDEAVVQAPRHAPVVRTPSIQPSLLP
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KSD HAAPFAKSHLVHGSSPGVMGTSVATSASKIIPQGADSTMLATKTVKHGAPSPSHPISAPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 HAAPFAKSHLVHGSSPGVMGTSVATSASKIIPQGADSTMLATKTVKHGAPSPSHPISAPQ
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120
pF1KSD AAAAAALRRQMASQAPAVNTLTESTLKNVPQVVNVQELKNNPATPSTA----------KT
:::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS83 AAAAAALRRQMASQAPAVNTLTESTLKNVPQVVNVQELKNNPATPSTAMGSSVPYSTAKT
1090 1100 1110 1120 1130 1140
1130 1140 1150 1160 1170 1180
pF1KSD PHPVLTPVAANQAKQGSLINSLKPSGPTPASGQLSSGDKASGTAKIETAVTSTPSASGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PHPVLTPVAANQAKQGSLINSLKPSGPTPASGQLSSGDKASGTAKIETAVTSTPSASGQF
1150 1160 1170 1180 1190 1200
1190 1200 1210 1220 1230 1240
pF1KSD SKPFSFSPSGTGFNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGGSKPSYEAIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SKPFSFSPSGTGFNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGGSKPSYEAIPE
1210 1220 1230 1240 1250 1260
1250 1260 1270 1280 1290 1300
pF1KSD SSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLFPSSLAGET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLFPSSLAGET
1270 1280 1290 1300 1310 1320
1310 1320 1330 1340 1350 1360
pF1KSD LGSFSGLRVGQADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVLGKHTEPPVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LGSFSGLRVGQADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVLGKHTEPPVTS
1330 1340 1350 1360 1370 1380
1370 1380 1390 1400 1410 1420
pF1KSD SATTTSVAPPAATSTSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SATTTSVAPPAATSTSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTV
1390 1400 1410 1420 1430 1440
1430 1440 1450 1460 1470 1480
pF1KSD PPSAPPPTTAATPLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDSEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PPSAPPPTTAATPLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDSEV
1450 1460 1470 1480 1490 1500
1490 1500 1510 1520 1530 1540
pF1KSD SASAASLLEEQQSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSLVALSAEATPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SASAASLLEEQQSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSLVALSAEATPA
1510 1520 1530 1540 1550 1560
1550 1560 1570 1580 1590 1600
pF1KSD TTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIVAPGPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIVAPGPSA
1570 1580 1590 1600 1610 1620
1610 1620 1630 1640 1650 1660
pF1KSD EAAAFGTVTSGSSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAASTAPSLFGQQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EAAAFGTVTSGSSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAASTAPSLFGQQT
1630 1640 1650 1660 1670 1680
1670 1680 1690 1700 1710 1720
pF1KSD GSTASTAAATPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GSTASTAAATPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGF
1690 1700 1710 1720 1730 1740
1730 1740 1750 1760 1770 1780
pF1KSD SSVPAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SSVPAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSP
1750 1760 1770 1780 1790 1800
1790 1800 1810 1820 1830 1840
pF1KSD GFGQGGSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGIVFGQQSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GFGQGGSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGIVFGQQSSSSS
1810 1820 1830 1840 1850 1860
1850 1860 1870 1880 1890 1900
pF1KSD GSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTF
1870 1880 1890 1900 1910 1920
1910 1920 1930 1940 1950 1960
pF1KSD GGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFGG
1930 1940 1950 1960 1970 1980
1970 1980 1990 2000 2010 2020
pF1KSD VPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGSLAMSLSPTLKGRLLLMRPKAGGGR
::::::::::::::::::::::::::::::::::: .. : . : : : . . :.
CCDS83 VPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFG-FGSSSNTTSFGTLASQNAPTFGSL
1990 2000 2010 2020 2030
2030 2040 2050 2060 2070 2080
pF1KSD EQAAPGRKSNESRSLGHLCMERALTSPLKVWEQQQHHILRHARESECPHFRITVPTDFWF
: . : .. :
CCDS83 SQQTSGFGTQSSGFSGFGSGTGGFSFGSNNSSVQGFGGWRS
2040 2050 2060 2070 2080
>>CCDS83430.1 NUP214 gene_id:8021|Hs108|chr9 (916 aa)
initn: 5364 init1: 5301 opt: 5306 Z-score: 2268.4 bits: 432.2 E(32554): 4.9e-120
Smith-Waterman score: 5306; 96.7% identity (97.7% similar) in 871 aa overlap (1171-2041:18-887)
1150 1160 1170 1180 1190 1200
pF1KSD QAKQGSLINSLKPSGPTPASGQLSSGDKASGTAKIETAVTSTPSASGQFSKPFSFSPSGT
::::::::::::::::::::::::::::::
CCDS83 MKSSLLLRGVHFCFHLPGTAKIETAVTSTPSASGQFSKPFSFSPSGT
10 20 30 40
1210 1220 1230 1240 1250 1260
pF1KSD GFNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGGSKPSYEAIPESSPPSGITSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GFNFGIITPTPSSNFTAAQGATPSTKESSQPDAFSSGGGSKPSYEAIPESSPPSGITSAS
50 60 70 80 90 100
1270 1280 1290 1300 1310 1320
pF1KSD NTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLFPSSLAGETLGSFSGLRVGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLFPSSLAGETLGSFSGLRVGQ
110 120 130 140 150 160
1330 1340 1350 1360 1370 1380
pF1KSD ADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVLGKHTEPPVTSSATTTSVAPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVLGKHTEPPVTSSATTTSVAPPA
170 180 190 200 210 220
1390 1400 1410 1420 1430 1440
pF1KSD ATSTSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ATSTSSTAVFGSLPVTSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTTAA
230 240 250 260 270 280
1450 1460 1470 1480 1490 1500
pF1KSD TPLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDSEVSASAASLLEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TPLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDSEVSASAASLLEEQ
290 300 310 320 330 340
1510 1520 1530 1540 1550 1560
pF1KSD QSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSLVALSAEATPATTGVPDARTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSLVALSAEATPATTGVPDARTEA
350 360 370 380 390 400
1570 1580 1590 1600 1610 1620
pF1KSD VPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIVAPGPSAEAAAFGTVTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIVAPGPSAEAAAFGTVTSG
410 420 430 440 450 460
1630 1640 1650 1660 1670 1680
pF1KSD SSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAASTAPSLFGQQTGSTASTAAATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAASTAPSLFGQQTGSTASTAAATP
470 480 490 500 510 520
1690 1700 1710 1720 1730 1740
pF1KSD QVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGFSSVPAFGQPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGFSSVPAFGQPAS
530 540 550 560 570 580
1750 1760 1770 1780 1790 1800
pF1KSD STPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFGQGGSVFGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 STPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFGQGGSVFGG
590 600 610 620 630 640
1810 1820 1830 1840 1850 1860
pF1KSD TSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGIVFGQQSSSSSGSVFGSGNTGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTGGIVFGQQSSSSSGSVFGSGNTGR
650 660 670 680 690 700
1870 1880 1890 1900 1910 1920
pF1KSD GGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQ
710 720 730 740 750 760
1930 1940 1950 1960 1970 1980
pF1KSD KPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFGGVPAFGSAPAFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 KPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFGGVPAFGSAPAFT
770 780 790 800 810 820
1990 2000 2010 2020 2030 2040
pF1KSD SPLGSTGGKVFGEGTAAASAGGFGSLAMSLSPTLKGRLLLMRPKAGGGREQAAPGRKSNE
:::::::::::::::::::::::: .. : . : : : . . :. : . : ..
CCDS83 SPLGSTGGKVFGEGTAAASAGGFG-FGSSSNTTSFGTLASQNAPTFGSLSQQTSGFGTQS
830 840 850 860 870 880
2050 2060 2070 2080 2090
pF1KSD SRSLGHLCMERALTSPLKVWEQQQHHILRHARESECPHFRITVPTDFWFWDPE
:
CCDS83 SGFSGFGSGTGGFSFGSNNSSVQGFGGWRS
890 900 910
2093 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:24:27 2016 done: Wed Nov 2 23:24:28 2016
Total Scan time: 5.410 Total Display time: 0.340
Function used was FASTA [36.3.4 Apr, 2011]