FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0025, 391 aa
  1>>>pF1KSDA0025 391 - 391 aa - 391 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8731+/-0.000726; mu= 11.1078+/- 0.044
 mean_var=118.5032+/-24.035, 0's: 0 Z-trim(113.7): 16  B-trim: 379 in 1/51
 Lambda= 0.117817
 statistics sampled from 14308 (14318) to 14308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.44), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS10771.1 HERPUD1 gene_id:9709|Hs108|chr16       ( 391) 2718 472.4 3.2e-133
CCDS45492.1 HERPUD1 gene_id:9709|Hs108|chr16       ( 390) 2699 469.1  3e-132
CCDS5446.1 HERPUD2 gene_id:64224|Hs108|chr7        ( 406)  363 72.1   1e-12


>>CCDS10771.1 HERPUD1 gene_id:9709|Hs108|chr16            (391 aa)
 initn: 2718 init1: 2718 opt: 2718  Z-score: 2505.3  bits: 472.4 E(32554): 3.2e-133
Smith-Waterman score: 2718; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)

               10        20        30        40        50        60
pF1KSD MESETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MESETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KLLLDHQCLRDLLPKQEKRHVLHLVCNVKSPSKMPEINAKVAESTEEPAGSNRGQYPEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KLLLDHQCLRDLLPKQEKRHVLHLVCNVKSPSKMPEINAKVAESTEEPAGSNRGQYPEDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SSDGLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTPYGWLQLSWFQQIYARQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSDGLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTPYGWLQLSWFQQIYARQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YYMQYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YYMQYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD NQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD YLHHVGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPETEDPNHLPPDRDVLDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YLHHVGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPETEDPNHLPPDRDVLDGE
              310       320       330       340       350       360

              370       380       390 
pF1KSD QTSPSFMSTAWLVFKTFFASLLPEGPPAIAN
       :::::::::::::::::::::::::::::::
CCDS10 QTSPSFMSTAWLVFKTFFASLLPEGPPAIAN
              370       380       390 

>>CCDS45492.1 HERPUD1 gene_id:9709|Hs108|chr16            (390 aa)
 initn: 2195 init1: 2195 opt: 2699  Z-score: 2487.9  bits: 469.1 E(32554): 3e-132
Smith-Waterman score: 2699; 99.7% identity (99.7% similar) in 391 aa overlap (1-391:1-390)

               10        20        30        40        50        60
pF1KSD MESETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MESETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KLLLDHQCLRDLLPKQEKRHVLHLVCNVKSPSKMPEINAKVAESTEEPAGSNRGQYPEDS
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KLLLDHQCLRDLLPK-EKRHVLHLVCNVKSPSKMPEINAKVAESTEEPAGSNRGQYPEDS
               70         80        90       100       110         

              130       140       150       160       170       180
pF1KSD SSDGLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTPYGWLQLSWFQQIYARQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSDGLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTPYGWLQLSWFQQIYARQ
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KSD YYMQYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YYMQYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGA
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KSD NQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVM
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KSD YLHHVGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPETEDPNHLPPDRDVLDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YLHHVGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPETEDPNHLPPDRDVLDGE
     300       310       320       330       340       350         

              370       380       390 
pF1KSD QTSPSFMSTAWLVFKTFFASLLPEGPPAIAN
       :::::::::::::::::::::::::::::::
CCDS45 QTSPSFMSTAWLVFKTFFASLLPEGPPAIAN
     360       370       380       390

>>CCDS5446.1 HERPUD2 gene_id:64224|Hs108|chr7             (406 aa)
 initn: 878 init1: 334 opt: 363  Z-score: 341.7  bits: 72.1 E(32554): 1e-12
Smith-Waterman score: 941; 41.0% identity (65.6% similar) in 410 aa overlap (9-391:9-406)

               10        20        30        40        50        60
pF1KSD MESETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSG
               ::::..:.:::.. :  .:   .:.::.::.::: ::: .:  .::::.:::
CCDS54 MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSG
               10        20        30        40        50        60

               70        80        90                100       110 
pF1KSD KLLLDHQCLRDLLPKQEKRHVLHLVCNVKSPSKMP---------EINAKVAESTEEPAGS
       .:: ::  :.:.: ::.. :..::::. ..: . :         :  :. ..:. . .::
CCDS54 RLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGS
               70        80        90       100       110       120

                    120       130       140           150          
pF1KSD ---NRGQYPED----SSSDGLRQREVLRNLSSPGWENISRPEAAQ----QAFQGLG--PG
          . ::   .    :::.::::: .: . ..   .. . : . :    . : : .  ::
CCDS54 TTPSSGQETLSLAVGSSSEGLRQR-TLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPG
              130       140        150       160       170         

      160       170       180       190       200       210        
pF1KSD FSGYTPYGWLQLSWFQQIYARQYYMQYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQ
       :  :  .. ::. :.::.::.:::::: ::..:...    :.    :..: :       .
CCDS54 FPVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPTQ---PTTSQPLNLA---H
     180       190       200       210       220          230      

      220       230       240       250       260       270        
pF1KSD FPAENQPANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL
        :.:. :   : . :   :   :.:..:::::::...:.: .::::::: :. .  ...:
CCDS54 VPGEEPPPAPNLVAQ--ENRPMNENVQMNAQGGPVLNEED-FNRDWLDWMYTFSRAAILL
           240         250       260       270        280       290

      280       290       300       310        320       330       
pF1KSD SILYFYSSLSRFLMVMGATVVMYLHHVGWFPFRPRPV-QNFPNDGPPPDVVNQDPNNNLQ
       ::.:::::.:::.::::: ...:::..:::::: .   :. ::..   .: :.  : :  
CCDS54 SIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNNNA--EVNNDGQNANNL
              300       310       320       330         340        

       340       350       360           370       380       390 
pF1KSD EGTDPETEDPNHLPPDRDVLDGEQTS----PSFMSTAWLVFKTFFASLLPEGPPAIAN
       :  . :    . :  .     ::..:    :..:..::  . :::.::.::::: .::
CCDS54 ELEEMERLMDDGLEDESGEDGGEDASAIQRPGLMASAWSFITTFFTSLIPEGPPQVAN
      350       360       370       380       390       400      




391 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:26:19 2016 done: Wed Nov  2 23:26:20 2016
 Total Scan time:  2.780 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]