FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0026, 288 aa
  1>>>pF1KSDA0026 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0964+/-0.000899; mu= 9.3058+/- 0.054
 mean_var=150.3825+/-30.144, 0's: 0 Z-trim(112.5): 14  B-trim: 587 in 1/50
 Lambda= 0.104586
 statistics sampled from 13205 (13217) to 13205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.406), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS14512.1 MORF4L2 gene_id:9643|Hs108|chrX        ( 288) 1904 298.3 4.3e-81
CCDS32304.1 MORF4L1 gene_id:10933|Hs108|chr15      ( 323) 1284 204.8 6.8e-53
CCDS10307.1 MORF4L1 gene_id:10933|Hs108|chr15      ( 362) 1284 204.8 7.4e-53
CCDS58393.1 MORF4L1 gene_id:10933|Hs108|chr15      ( 235) 1274 203.2 1.5e-52


>>CCDS14512.1 MORF4L2 gene_id:9643|Hs108|chrX             (288 aa)
 initn: 1904 init1: 1904 opt: 1904  Z-score: 1569.3  bits: 298.3 E(32554): 4.3e-81
Smith-Waterman score: 1904; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KSD MSSRKQGSQPRGQQSAEEENFKKPTRSNMQRSKMRGASSGKKTAGPQQKNLEPALPGRWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSRKQGSQPRGQQSAEEENFKKPTRSNMQRSKMRGASSGKKTAGPQQKNLEPALPGRWG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GRSAENPPSGSVRKTRKNKQKTPGNGDGGSTSEAPQPPRKKRARADPTVESEEAFKNRME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GRSAENPPSGSVRKTRKNKQKTPGNGDGGSTSEAPQPPRKKRARADPTVESEEAFKNRME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VKVKIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYANCKKSQGNVDNKEYAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VKVKIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYANCKKSQGNVDNKEYAVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EVVAGIKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQVYGAPHLLRLFVRIGAMLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQVYGAPHLLRLFVRIGAMLA
              190       200       210       220       230       240

              250       260       270       280        
pF1KSD YTPLDEKSLALLLGYLHDFLKYLAKNSASLFTASDYKVASAEYHRKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YTPLDEKSLALLLGYLHDFLKYLAKNSASLFTASDYKVASAEYHRKAL
              250       260       270       280        

>>CCDS32304.1 MORF4L1 gene_id:10933|Hs108|chr15           (323 aa)
 initn: 1387 init1: 1274 opt: 1284  Z-score: 1063.1  bits: 204.8 E(32554): 6.8e-53
Smith-Waterman score: 1328; 76.1% identity (87.9% similar) in 272 aa overlap (17-288:72-323)

                             10        20        30        40      
pF1KSD               MSSRKQGSQPRGQQSAEEENFKKPTRSNMQRSKMRGASSGKKTAGP
                                     ......: .. .. ..:::::. ::::.: 
CCDS32 YFIHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRGAAPGKKTSGL
              50        60        70        80        90       100 

         50        60        70        80        90       100      
pF1KSD QQKNLEPALPGRWGGRSAENPPSGSVRKTRKNKQKTPGNGDGGSTSEAPQPPRKKRARAD
       ::::.:                     ::.:::::::::::::::::.::::::::::.:
CCDS32 QQKNVEV--------------------KTKKNKQKTPGNGDGGSTSETPQPPRKKRARVD
                                 110       120       130       140 

        110       120       130       140       150       160      
pF1KSD PTVESEEAFKNRMEVKVKIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYANCK
       ::::.::.: ::.:::::::::::::::.::::.::::::: ::::::::.:::.::: :
CCDS32 PTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYK
             150       160       170       180       190       200 

        170       180       190       200       210       220      
pF1KSD KSQGNVDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQVYGAP
       ::.::.:::::::::::::::::::::::::::::::::::::::  :::::::::::::
CCDS32 KSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAP
             210       220       230       240       250       260 

        230       240       250       260       270       280      
pF1KSD HLLRLFVRIGAMLAYTPLDEKSLALLLGYLHDFLKYLAKNSASLFTASDYKVASAEYHRK
       :::::::::::::::::::::::::::.::::::::::::::.::.::::.::  :::::
CCDS32 HLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVAPPEYHRK
             270       280       290       300       310       320 

         
pF1KSD AL
       :.
CCDS32 AV
         

>>CCDS10307.1 MORF4L1 gene_id:10933|Hs108|chr15           (362 aa)
 initn: 1387 init1: 1274 opt: 1284  Z-score: 1062.4  bits: 204.8 E(32554): 7.4e-53
Smith-Waterman score: 1328; 76.1% identity (87.9% similar) in 272 aa overlap (17-288:111-362)

                             10        20        30        40      
pF1KSD               MSSRKQGSQPRGQQSAEEENFKKPTRSNMQRSKMRGASSGKKTAGP
                                     ......: .. .. ..:::::. ::::.: 
CCDS10 PSVHHPLLTSSWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRGAAPGKKTSGL
               90       100       110       120       130       140

         50        60        70        80        90       100      
pF1KSD QQKNLEPALPGRWGGRSAENPPSGSVRKTRKNKQKTPGNGDGGSTSEAPQPPRKKRARAD
       ::::.:                     ::.:::::::::::::::::.::::::::::.:
CCDS10 QQKNVEV--------------------KTKKNKQKTPGNGDGGSTSETPQPPRKKRARVD
                                  150       160       170       180

        110       120       130       140       150       160      
pF1KSD PTVESEEAFKNRMEVKVKIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYANCK
       ::::.::.: ::.:::::::::::::::.::::.::::::: ::::::::.:::.::: :
CCDS10 PTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYK
              190       200       210       220       230       240

        170       180       190       200       210       220      
pF1KSD KSQGNVDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQVYGAP
       ::.::.:::::::::::::::::::::::::::::::::::::::  :::::::::::::
CCDS10 KSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAP
              250       260       270       280       290       300

        230       240       250       260       270       280      
pF1KSD HLLRLFVRIGAMLAYTPLDEKSLALLLGYLHDFLKYLAKNSASLFTASDYKVASAEYHRK
       :::::::::::::::::::::::::::.::::::::::::::.::.::::.::  :::::
CCDS10 HLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVAPPEYHRK
              310       320       330       340       350       360

         
pF1KSD AL
       :.
CCDS10 AV
         

>>CCDS58393.1 MORF4L1 gene_id:10933|Hs108|chr15           (235 aa)
 initn: 1371 init1: 1274 opt: 1274  Z-score: 1056.7  bits: 203.2 E(32554): 1.5e-52
Smith-Waterman score: 1312; 80.4% identity (88.2% similar) in 255 aa overlap (34-288:1-235)

            10        20        30        40        50        60   
pF1KSD RKQGSQPRGQQSAEEENFKKPTRSNMQRSKMRGASSGKKTAGPQQKNLEPALPGRWGGRS
                                     ::::. ::::.: ::::.:           
CCDS58                               MRGAAPGKKTSGLQQKNVEV----------
                                             10        20          

            70        80        90       100       110       120   
pF1KSD AENPPSGSVRKTRKNKQKTPGNGDGGSTSEAPQPPRKKRARADPTVESEEAFKNRMEVKV
                 ::.:::::::::::::::::.::::::::::.:::::.::.: ::.::::
CCDS58 ----------KTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVEVKV
                         30        40        50        60        70

           130       140       150       160       170       180   
pF1KSD KIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYANCKKSQGNVDNKEYAVNEVV
       :::::::::::.::::.::::::: ::::::::.:::.::: :::.::.:::::::::::
CCDS58 KIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVV
               80        90       100       110       120       130

           190       200       210       220       230       240   
pF1KSD AGIKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQVYGAPHLLRLFVRIGAMLAYTP
       ::::::::::::::::::::::::::::  ::::::::::::::::::::::::::::::
CCDS58 AGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTP
              140       150       160       170       180       190

           250       260       270       280        
pF1KSD LDEKSLALLLGYLHDFLKYLAKNSASLFTASDYKVASAEYHRKAL
       ::::::::::.::::::::::::::.::.::::.::  ::::::.
CCDS58 LDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVAPPEYHRKAV
              200       210       220       230     




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:26:57 2016 done: Wed Nov  2 23:26:58 2016
 Total Scan time:  2.660 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]