FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0027, 377 aa
  1>>>pF1KSDA0027 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2018+/-0.000798; mu= 17.1923+/- 0.048
 mean_var=60.1511+/-11.950, 0's: 0 Z-trim(106.0): 21  B-trim: 0 in 0/50
 Lambda= 0.165368
 statistics sampled from 8709 (8713) to 8709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.268), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS14083.1 MLC1 gene_id:23209|Hs108|chr22         ( 377) 2454 593.9 7.9e-170


>>CCDS14083.1 MLC1 gene_id:23209|Hs108|chr22              (377 aa)
 initn: 2454 init1: 2454 opt: 2454  Z-score: 3162.4  bits: 593.9 E(32554): 7.9e-170
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KSD MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
              310       320       330       340       350       360

              370       
pF1KSD EFDKEKAWRAVVVQMAQ
       :::::::::::::::::
CCDS14 EFDKEKAWRAVVVQMAQ
              370       




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:27:32 2016 done: Wed Nov  2 23:27:33 2016
 Total Scan time:  1.890 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]