Result of FASTA (omim) for
pF1KSDA0027
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0027, 377 aa
1>>>pF1KSDA0027 377 - 377 aa - 377 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2055+/-0.000373; mu= 17.2443+/- 0.023
mean_var=64.8349+/-12.754, 0's: 0 Z-trim(112.4): 16 B-trim: 0 in 0/52
Lambda= 0.159283
statistics sampled from 21287 (21298) to 21287 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.25), width: 16
Scan time: 7.410
The best scores are: opt bits E(85289)
XP_016884160 (OMIM: 604004,605908) PREDICTED: memb ( 377) 2454 572.8 4.5e-163
NP_055981 (OMIM: 604004,605908) membrane protein M ( 377) 2454 572.8 4.5e-163
NP_631941 (OMIM: 604004,605908) membrane protein M ( 377) 2454 572.8 4.5e-163
XP_011528980 (OMIM: 604004,605908) PREDICTED: memb ( 322) 1945 455.8 6.4e-128
>>XP_016884160 (OMIM: 604004,605908) PREDICTED: membrane (377 aa)
initn: 2454 init1: 2454 opt: 2454 Z-score: 3048.7 bits: 572.8 E(85289): 4.5e-163
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KSD MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
310 320 330 340 350 360
370
pF1KSD EFDKEKAWRAVVVQMAQ
:::::::::::::::::
XP_016 EFDKEKAWRAVVVQMAQ
370
>>NP_055981 (OMIM: 604004,605908) membrane protein MLC1 (377 aa)
initn: 2454 init1: 2454 opt: 2454 Z-score: 3048.7 bits: 572.8 E(85289): 4.5e-163
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KSD MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
310 320 330 340 350 360
370
pF1KSD EFDKEKAWRAVVVQMAQ
:::::::::::::::::
NP_055 EFDKEKAWRAVVVQMAQ
370
>>NP_631941 (OMIM: 604004,605908) membrane protein MLC1 (377 aa)
initn: 2454 init1: 2454 opt: 2454 Z-score: 3048.7 bits: 572.8 E(85289): 4.5e-163
Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KSD MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
310 320 330 340 350 360
370
pF1KSD EFDKEKAWRAVVVQMAQ
:::::::::::::::::
NP_631 EFDKEKAWRAVVVQMAQ
370
>>XP_011528980 (OMIM: 604004,605908) PREDICTED: membrane (322 aa)
initn: 1945 init1: 1945 opt: 1945 Z-score: 2417.6 bits: 455.8 E(85289): 6.4e-128
Smith-Waterman score: 1981; 85.4% identity (85.4% similar) in 377 aa overlap (1-377:1-322)
10 20 30 40 50 60
pF1KSD MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTQEPFREELAYDRMPTLERGRQDPASYAPDAKPSDLQLSKRLPPCFSHKTWVFSVLMGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLLVTSGFSLYLGNVFPAEMDYLRCAAGSCIPSAIVSFTVSRRNANVIPNFQILFVSTFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTTTCLIWFGCKLVLNPSAININFNLILLLLLELLMAATVIIAARSSEEDCKKKKGSMSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SANILDEVPFPARVLKSYSVVEVIAGISAVLGGIIALNVDDSVSGPHLSVTFFWILVACF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVEMFKDYPPAIK--
250 260 270 280 290
310 320 330 340 350 360
pF1KSD YDVLLLLLLLVLLLQAGLNTGTAIQCVRFKVSARLQGASWDTQNGPQERLAGEVARSPLK
:::::::
XP_011 -----------------------------------------------------VARSPLK
300
370
pF1KSD EFDKEKAWRAVVVQMAQ
:::::::::::::::::
XP_011 EFDKEKAWRAVVVQMAQ
310 320
377 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:27:33 2016 done: Wed Nov 2 23:27:34 2016
Total Scan time: 7.410 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]