FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0028, 903 aa
  1>>>pF1KSDA0028 903 - 903 aa - 903 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9525+/-0.00104; mu= 17.6349+/- 0.063
 mean_var=74.4739+/-15.046, 0's: 0 Z-trim(104.5): 22  B-trim: 0 in 0/47
 Lambda= 0.148618
 statistics sampled from 7903 (7915) to 7903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.243), width:  16
 Scan time:  3.980

The best scores are:                                      opt bits E(32554)
CCDS2728.1 LARS2 gene_id:23395|Hs108|chr3          ( 903) 6164 1331.7       0


>>CCDS2728.1 LARS2 gene_id:23395|Hs108|chr3               (903 aa)
 initn: 6164 init1: 6164 opt: 6164  Z-score: 7136.3  bits: 1331.7 E(32554):    0
Smith-Waterman score: 6164; 100.0% identity (100.0% similar) in 903 aa overlap (1-903:1-903)

               10        20        30        40        50        60
pF1KSD MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KWWHQRIKEQASKISEADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KWWHQRIKEQASKISEADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QVINPMGWDAFGLPAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDREITTCLPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QVINPMGWDAFGLPAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDREITTCLPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YYKWTQYLFIKLYEAGLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 YYKWTQYLFIKLYEAGLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WFIKTTAYAKAMQDALADLPEWYGIKGMQAHWIGDCVGCHLDFTLKVHGQATGEKLTAYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 WFIKTTAYAKAMQDALADLPEWYGIKGMQAHWIGDCVGCHLDFTLKVHGQATGEKLTAYT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ATPEAIYGTSHVAISPSHRLLHGHSSLKEALRMALVPGKDCLTPVMAVNMLTQQEVPVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 ATPEAIYGTSHVAISPSHRLLHGHSSLKEALRMALVPGKDCLTPVMAVNMLTQQEVPVVI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LAKADLEGSLDSKIGIPSTSSEDTILAQTLGLAYSEVIETLPDGTERLSSSAEFTGMTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LAKADLEGSLDSKIGIPSTSSEDTILAQTLGLAYSEVIETLPDGTERLSSSAEFTGMTRQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DAFLALTQKARGKRVGGDVTSDKLKDWLISRQRYWGTPIPIVHCPVCGPTPVPLEDLPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 DAFLALTQKARGKRVGGDVTSDKLKDWLISRQRYWGTPIPIVHCPVCGPTPVPLEDLPVT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LPNIASFTGKGGPPLAMASEWVNCSCPRCKGAAKRETDTMDTFVDSAWYYFRYTDPHNPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LPNIASFTGKGGPPLAMASEWVNCSCPRCKGAAKRETDTMDTFVDSAWYYFRYTDPHNPH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SPFNTAVADYWMPVDLYIGGKEHAVMHLFYARFFSHFCHDQKMVKHREPFHKLLAQGLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SPFNTAVADYWMPVDLYIGGKEHAVMHLFYARFFSHFCHDQKMVKHREPFHKLLAQGLIK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD GQTFRLPSGQYLQREEVDLTGSVPVHAKTKEKLEVTWEKMSKSKHNGVDPEEVVEQYGID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GQTFRLPSGQYLQREEVDLTGSVPVHAKTKEKLEVTWEKMSKSKHNGVDPEEVVEQYGID
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD TIRLYILFAAPPEKDILWDVKTDALPGVLRWQQRLWTLTTRFIEARASGKSPQPQLLSNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 TIRLYILFAAPPEKDILWDVKTDALPGVLRWQQRLWTLTTRFIEARASGKSPQPQLLSNK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD EKAEARKLWEYKNSVISQVTTHFTEDFSLNSAISQLMGLSNALSQASQSVILHSPEFEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EKAEARKLWEYKNSVISQVTTHFTEDFSLNSAISQLMGLSNALSQASQSVILHSPEFEDA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD LCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQ
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD MAVLINNKACGKIPVPQQVARDQDKVHEFVLQSELGVRLLQGRSIKKSFLSPRTALINFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MAVLINNKACGKIPVPQQVARDQDKVHEFVLQSELGVRLLQGRSIKKSFLSPRTALINFL
              850       860       870       880       890       900

          
pF1KSD VQD
       :::
CCDS27 VQD
          




903 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:28:08 2016 done: Wed Nov  2 23:28:09 2016
 Total Scan time:  3.980 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]